| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 3,729,347 | G→A | E337K (GAG→AAG) | xylR → | xylose divergent operon transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,729,347 | 0 | G | A | 99.1% | 380.0 / NA | 109 | E337K (GAG→AAG) | xylR | xylose divergent operon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (59/49); minor base C (0/1); total (59/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
GCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCGAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAG > CP009273/3729211‑3729482 | gCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCaag < 1:3199740/139‑1 (MQ=255)gCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCaag > 1:3805553/1‑139 (MQ=255)gCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGAGGGTGAAACCATCCCTGCCATGATTCATGCCaag > 1:3594173/1‑139 (MQ=255) tACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTAGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGc < 1:1753240/139‑1 (MQ=255) tCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCaag > 1:3526260/1‑130 (MQ=255) cGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGgaga > 1:978192/1‑139 (MQ=255) gTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa < 1:2253667/139‑1 (MQ=255) gTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa > 1:85422/1‑139 (MQ=255) gTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa > 1:3425827/1‑139 (MQ=255) aTCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAgc > 1:1664538/1‑139 (MQ=255) cACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGgaga > 1:3505327/1‑133 (MQ=255) gCCTGTTACGGGATTAAAGTGGAAGAGGTACTGTATGCGGTCGGGATCGCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGGGGGGGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCa > 1:3705666/1‑139 (MQ=255) gCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCa > 1:80469/1‑139 (MQ=255) cTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAg < 1:1254462/138‑1 (MQ=255) cTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGt < 1:2136552/139‑1 (MQ=255) tAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTct > 1:2547958/1‑138 (MQ=255) aaaGGGATTAAAGTGGATCAGGTACGGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTctgc < 1:3375305/139‑1 (MQ=255) gATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGa < 1:2386093/137‑1 (MQ=255) aTTAAGGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGGGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGAGCGCAGTCTGCTGAtt > 1:3827252/1‑138 (MQ=255) aTTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa < 1:3139189/119‑1 (MQ=255) aTTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGAtt > 1:2000901/1‑138 (MQ=255) aGTGGATCAGGTCCTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGt < 1:1135130/124‑1 (MQ=255) gATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTg > 1:3361967/1‑105 (MQ=255) aTCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGt > 1:967300/1‑119 (MQ=255) cAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGt < 1:1064991/139‑1 (MQ=255) aGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAaccg < 1:302038/132‑2 (MQ=255) gTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGAttt > 1:3306747/1‑124 (MQ=255) gTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAAAAAGCGCGCAGTCTGCGGATTTCAACCACCTTGTCGa > 1:1784795/1‑139 (MQ=255) gTACTGGATGCGGTCGGGATCTCGCGCACCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGGGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGa > 1:2417479/1‑139 (MQ=255) tACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCg < 1:2906885/137‑1 (MQ=255) aCTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATc > 1:136935/1‑139 (MQ=255) tGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGga > 1:142638/1‑97 (MQ=255) gATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATg > 1:3236724/1‑139 (MQ=255) tGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGCGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGAt > 1:2474921/1‑132 (MQ=255) cGGTCTCGATCTCGCGCTCCAATCTTGAGAAGCGTTTTATTGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATTCCAAGTAGTTGGAGTAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGat > 1:3202639/1‑139 (MQ=255) ggTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTGTTAAAGAAGAGGGGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAgc > 1:4088567/1‑96 (MQ=255) ggcGGGATCTCGCGCCCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGata < 1:375205/136‑1 (MQ=255) gTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGata > 1:2701303/1‑138 (MQ=255) cGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAACGAAGAGGTGGGTGAACCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCg < 1:4053675/139‑1 (MQ=255) ggATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCa > 1:60490/1‑139 (MQ=255) gATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCaa < 1:971870/110‑1 (MQ=255) ctcGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtg < 1:1789406/139‑1 (MQ=255) cgcgcgACAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCACCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg < 1:3337056/139‑1 (MQ=255) cgcgCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATTATTCATACCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg < 1:1670077/139‑1 (MQ=255) cgcgCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg < 1:2233720/139‑1 (MQ=255) gcgcTCCAATCTTGAGAAGCGTTTTCAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGc > 1:1165518/1‑139 (MQ=255) gcTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCgg < 1:3835084/139‑1 (MQ=255) tCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCaa < 1:676278/116‑1 (MQ=255) tCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa < 1:2070624/72‑1 (MQ=255) agaAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGga > 1:2559643/1‑64 (MQ=255) agaAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCg > 1:2848592/1‑116 (MQ=255) gaAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCt < 1:330381/138‑1 (MQ=255) aaGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGc > 1:774741/1‑139 (MQ=255) aGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGc < 1:2946903/138‑1 (MQ=255) aGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGc < 1:2310049/138‑1 (MQ=255) cGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGt > 1:4240324/1‑72 (MQ=255) cGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGATGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAat > 1:3015113/1‑139 (MQ=255) ttttAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCg < 1:838251/94‑1 (MQ=255) ttttAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAatat > 1:3276345/1‑139 (MQ=255) ttttAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAatat > 1:3797076/1‑139 (MQ=255) tttAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGAt < 1:2809689/95‑1 (MQ=255) tttAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAatat < 1:659537/138‑1 (MQ=255) tAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGAt < 1:3958409/75‑1 (MQ=255) agaagaGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTg < 1:4215669/85‑1 (MQ=255) aagaGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTAc > 1:1333377/1‑137 (MQ=255) aagaGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTAc > 1:28420/1‑137 (MQ=255) gagGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGAt > 1:510530/1‑86 (MQ=255) gagGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATgaga > 1:3010315/1‑94 (MQ=255) agGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGata > 1:637314/1‑95 (MQ=255) gtgggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAaccacc > 1:1788137/1‑75 (MQ=255) gtgggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGttt > 1:1528331/1‑139 (MQ=255) gggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGttttt > 1:3058206/1‑139 (MQ=255) ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATg > 1:2045927/1‑85 (MQ=255) ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATc < 1:447498/109‑1 (MQ=255) ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGAGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGAAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTa > 1:563794/1‑139 (MQ=255) gtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaa > 1:3449066/1‑139 (MQ=255) tgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaa > 1:180639/1‑139 (MQ=255) gAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaa < 1:943332/139‑1 (MQ=255) gAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaa < 1:1626422/139‑1 (MQ=255) gAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaa < 1:3504617/139‑1 (MQ=255) gAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaa < 1:1634922/139‑1 (MQ=255) aaCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCGCCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaaaa < 1:3699143/139‑1 (MQ=255) aaCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATgaga < 1:2906027/83‑1 (MQ=255) aaCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaaaa > 1:69441/1‑139 (MQ=255) aaCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaa < 1:2982122/137‑1 (MQ=255) tccatGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCa > 1:2620157/1‑109 (MQ=255) tccatGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCata > 1:949013/1‑139 (MQ=255) gccatgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCg > 1:1628287/1‑78 (MQ=255) gccatgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAt > 1:733811/1‑83 (MQ=255) gccataATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGac > 1:4261947/1‑138 (MQ=255) ccatgATTCATGCCCAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaaaa < 1:1397370/128‑1 (MQ=255) catgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGacac < 1:3150066/138‑1 (MQ=255) atgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACacga < 1:3033527/139‑1 (MQ=255) aTTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACacgacg > 1:1977376/1‑138 (MQ=255) ttCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGc < 1:1277741/138‑1 (MQ=255) ttCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGc < 1:4147229/138‑1 (MQ=255) tCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCa < 1:1030846/139‑1 (MQ=255) tGCCAAAAAGCTGGGGAAAGAGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATATGCGGTGATCAATAGCTGCAATATTTATACTCTGTTTTTAAAAAAGCATATTaca > 1:3568476/1‑128 (MQ=255) gCCAAGAAGCTGGAGAAAGCTAGCAGTCTGCTGATTTCAAACACCTTGTCGATGAATGAGATATCGCAAAGGTGCGGTTATCCATAGCGGCAATATTTCTACTCGGTTTTTAAAAAAGCATATGACACGACGCCAAAag > 1:1128989/1‑139 (MQ=255) gCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTg < 1:3209095/48‑1 (MQ=255) | GCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCGAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAG > CP009273/3729211‑3729482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |