New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4532499 =	37 (0.740)	14 (0.300)	13/216	1.8	24.8%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	CP009273	4532813 =	51 (1.100)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)

GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCT  >  CP009273/4532362‑4532637                                                                                                                                          |                                                                                                                                            gTTATACCGCCAGTAATGCTGCTCGTTTTGACGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT                                                                                                                                            <  1:2508131‑M1/139‑1 (MQ=255)     taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACTAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG                                                                                                                                         >  1:9204‑M1/1‑138 (MQ=255)     taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGG                                                                                                                                        <  1:520398‑M1/139‑1 (MQ=255)        cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGctgtct                                                                                                                                     >  1:2205614‑M1/1‑133 (MQ=255)        cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA                                                                                                                                     >  1:525663‑M1/1‑139 (MQ=255)         taattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa                                                                                                                                    >  1:1336649‑M1/130‑139 (MQ=255)          ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa                                                                                                                                    >  1:1084760/1‑138 (MQ=255)             gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa                                                                                                                                    <  1:670059/135‑1 (MQ=255)               aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                              <  1:2760055/139‑1 (MQ=255)                catgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc                                                                                                                             <  1:2759588‑M1/17‑1 (MQ=255)                    tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata                                                                                                                          <  1:541822/138‑1 (MQ=255)                      ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑a                                                                                                                      >  1:1337116/1‑139 (MQ=255)                       tCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata                                                                                                                          >  1:2094083/1‑135 (MQ=255)                       ctttcctttcaaaaaactagttctaaatcgacaagggcagtcgttctttccaccttgtgttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc                                                                                                                             >  1:1541974‑M1/116‑132 (MQ=255)                          ttttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC                                                                                                                                       >  1:1056056‑M1/1‑119 (MQ=255)                           tttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ataaa                                                                                                                  <  1:72413/138‑1 (MQ=255)                                 aaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATC‑ataaa                                                                                                                  <  1:117393‑M1/27‑1 (MQ=255)                                   aTTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATAAAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACg                                                                                                         >  1:1399332/1‑139 (MQ=255)                                       tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATAAC‑ATAAATAAGTTACGAAtt                                                                                                     >  1:2219960/1‑139 (MQ=255)                                                aataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCa                                                                                             <  1:779380/138‑1 (MQ=255)                                                aataatCTCATAAACGAAAAATTAAAAAGAGAAGACGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTtctc                                                                                              <  1:6750/137‑1 (MQ=255)                                                 atcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg                                                                                                                                         <  1:2363365‑M1/5‑1 (MQ=255)                                                 ataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCaa                                                                                            >  1:1431472/1‑138 (MQ=255)                                                           aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgt                                                                                  <  1:2377036‑M1/139‑52 (MQ=255)                                                                  aaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta                                                                           <  1:355297‑M1/139‑59 (MQ=255)                                                                   tctgtacactttgttttgtaaacgagtttgactgccaacactgcccagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaa                                                                          >  1:2136109‑M1/72‑138 (MQ=255)                                                                       aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt                                                                      <  1:1345664‑M1/139‑64 (MQ=255)                                                                          aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                  <  1:796123/139‑1 (MQ=255)                                                                          aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                  <  1:2564159/139‑1 (MQ=255)                                                                          aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                  <  1:228102/139‑1 (MQ=255)                                                                          aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                  <  1:2356051/139‑1 (MQ=255)                                                                              tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc                                                                                                                              >  1:179568‑M1/61‑76 (MQ=255)                                                                              tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa                                                                <  1:2158716‑M1/78‑1 (MQ=255)                                                                               aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCa                                                             >  1:1477492/1‑139 (MQ=255)                                                                                   ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttat                                                            <  1:838335‑M1/137‑74 (MQ=255)                                                                                   ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                          <  1:1331886/138‑1 (MQ=255)                                                                                    gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa                                                         >  1:2189943/1‑138 (MQ=255)                                                                                       tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa                                                         >  1:1084515/1‑135 (MQ=255)                                                                                        acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATC‑ataa                                                                                                                   <  1:1604080‑M1/26‑1 (MQ=255)                                                                                             tttggctgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                               <  1:2700460‑M1/94‑1 (MQ=255)                                                                                             aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATAAAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGATACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                               >  1:552813/1‑139 (MQ=255)                                                                                              aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGt                                                    <  1:1560006/133‑1 (MQ=255)                                                                                              aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                              >  1:220448/1‑139 (MQ=255)                                                                                              aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                              >  1:1537172/1‑139 (MQ=255)                                                                                                ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt                                                                                              <  1:1639047‑M1/90‑40 (MQ=255)                                                                                                   ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaa                                         >  1:2748176/1‑139 (MQ=255)                                                                                                        aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTa                                          >  1:135451/1‑133 (MQ=255)                                                                                                          taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttattt                                                                                    >  1:214589‑M1/1‑41 (MQ=255)                                                                                                             gcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTa                               <  1:2118959‑M1/110‑1 (MQ=255)                                                                                                             gcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGCTTGATATGTAACTTATTTCTa                               <  1:2434445‑M1/110‑1 (MQ=255)                                                                                                             aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatg                                >  1:2434620‑M1/1‑38 (MQ=255)                                                                                                             aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTa                               >  1:1883524/1‑139 (MQ=255)                                                                                                               acagttttcacccaaaagatgaaacatTTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGATTGATATGTAAATTATTTCTAtt                             <  1:1745336‑M1/112‑1 (MQ=255)                                                                                                                         aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt                                                                      <  1:123485‑M1/89‑64 (MQ=255)                                                                                                                           ataaataCAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTtctc                                                                                              <  1:2069803/62‑1 (MQ=255)                                                                                                                              aataCAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac              <  1:1110809/139‑1 (MQ=255)                                                                                                                               agatgaaacatTTGGGGCCAAACTGTCCATATCCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac              >  1:734749‑M1/12‑139 (MQ=255)                                                                                                                                taCAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGCTTGATATGTAAATTATTTCTACTGTAAATTAATTTCACAt            <  1:1433924/139‑1 (MQ=255)                                                                                                                                  tgaaacatTTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACAt            >  1:694954‑M1/9‑137 (MQ=255)                                                                                                                                   aaGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttat                                                            >  1:1548058‑M1/1‑16 (MQ=255)                                                                                                                                    aGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATATTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAcc        <  1:2507886/139‑1 (MQ=255)                                                                                                                                     gACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa                                                                                    >  1:645750/1‑62 (MQ=255)                                                                                                                                     gACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAcc        >  1:2534133/1‑138 (MQ=255)                                                                                                                                       cAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCt       <  1:1949840/137‑1 (MQ=255)                                                                                                                                       cAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCt       <  1:52853/137‑1 (MQ=255)                                                                                                                                       cAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCt       <  1:742158/137‑1 (MQ=255)                                                                                                                                       cAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc      <  1:1268968/138‑1 (MQ=255)                                                                                                                                          ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaa   >  1:2315793‑M1/1‑9 (MQ=255)                                                                                                                                          TTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCGTAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt  <  1:896567‑M1/139‑1 (MQ=255)                                                                                                                                          TTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                  >  1:1458503‑M1/1‑75 (MQ=255)                                                                                                                                          TTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt  <  1:13336‑M1/139‑1 (MQ=255)                                                                                                                                          TTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCt  <  1:2692025‑M1/139‑1 (MQ=255)                                                                                                                                          TTGGGCCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCGATTGTAAATTAATTTCACATCACCTCCGCt  >  1:2733732‑M1/1‑139 (MQ=255)                                                                                                                                          |                                                                                                                                            GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATC‑ATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCT  >  CP009273/4532362‑4532637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.