Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	3,729,347	G→A	E337K (GAG→AAG)	xylR →	xylose divergent operon transcriptional activator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	3,729,347	0	G	A	100.0%	325.1 / NA	92	E337K (GAG→AAG)	xylR	xylose divergent operon transcriptional activator
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/45);  total (47/45)

GCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCGAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAA  >  CP009273/3729211‑3729481                                                                                                                                         |                                                                                                                                       gCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCaag                                                                                                                                      >  1:351678/1‑139 (MQ=255)          tCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGgag                                                                                                                             >  1:546381/1‑139 (MQ=255)            gaaaTCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa                                                                                                                           <  1:862889/137‑1 (MQ=255)            gTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa                                                                                                                           >  1:750052/1‑139 (MQ=255)            gTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa                                                                                                                           >  1:1037717/1‑139 (MQ=255)            gTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGaa                                                                                                                           >  1:2425212/1‑139 (MQ=255)               aTCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAgc                                                                                                                        <  1:39436/139‑1 (MQ=255)                    gCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCa                                                                                                                   >  1:1793518/1‑139 (MQ=255)                      cTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCaag                                                                                                                                      <  1:606405/118‑1 (MQ=255)                               gATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCCATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGt                                                                                                                 <  1:2094498/130‑1 (MQ=255)                                aTTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGgaga                                                                                                                            >  1:2030513/1‑118 (MQ=255)                                aTTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGAttt                                                                                                       >  1:1987646/1‑139 (MQ=255)                                   aaaGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCaa                                                                                                    <  1:424365/139‑1 (MQ=255)                                    aaGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAac                                                                                                   <  1:1970529/139‑1 (MQ=255)                                        ggATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAacca                                                                                                 <  1:2461162/137‑1 (MQ=255)                                         gATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCt                                                                                              >  1:285954/1‑139 (MQ=255)                                         gATCAGGGACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGAttt                                                                                                       >  1:670474/1‑130 (MQ=255)                                          aTCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTctg                                                                                                              <  1:2453684/122‑1 (MQ=255)                                              ggTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAgcgcg                                                                                                                     <  1:705017/111‑1 (MQ=255)                                              ggTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCg                                                                                         >  1:327982/1‑139 (MQ=255)                                                tACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTc                                                                                          <  1:1867437/136‑1 (MQ=255)                                                tACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCg                                                                                         <  1:163950/137‑1 (MQ=255)                                                tACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCg                                                                                         <  1:369248/137‑1 (MQ=255)                                                    ggATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCaa                                                                                                    >  1:1030219/1‑122 (MQ=255)                                                     gATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGAt                                                                                       <  1:139489/134‑1 (MQ=255)                                                     gATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATg                                                                                  >  1:1229734/1‑139 (MQ=255)                                                     gATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATg                                                                                  >  1:570377/1‑139 (MQ=255)                                                        gCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTGAAGAAGAGGTGGGTGAGACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCCGTCTGCTGATTTCAACCACCTTGTCGATCAATgaga                                                                               >  1:1989613/1‑139 (MQ=255)                                                        gCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTctgctg                                                                                                           >  1:2129014/1‑111 (MQ=255)                                                        gCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATgaga                                                                               >  1:232254/1‑139 (MQ=255)                                                         cGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGat                                                                              >  1:927889/1‑139 (MQ=255)                                                         cGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGat                                                                              >  1:1263651/1‑139 (MQ=255)                                                          ggTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCGGGAGCAAGCGCGCAGTCTGCTGGTTTCAACCACCCTGTCGATCAATgagcga                                                                             >  1:2810536/1‑136 (MQ=255)                                                           gTCGTGATCTCGCTCTCCAATCTTCAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAgcgc                                                                                                                      <  1:187283/97‑1 (MQ=255)                                                            tCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTctg                                                                                                              <  1:1787772/104‑1 (MQ=255)                                                              gggATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAATAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGCCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGc                                                                         <  1:1387644/139‑1 (MQ=255)                                                               ggATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGata                                                                             >  1:1564043/1‑134 (MQ=255)                                                                   ctcGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtg                                                                    <  1:1680601/139‑1 (MQ=255)                                                                     cgcgCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg                                                                  <  1:637339/139‑1 (MQ=255)                                                                     cgcgCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg                                                                  <  1:1710328/139‑1 (MQ=255)                                                                     cgcgCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg                                                                  <  1:2351510/139‑1 (MQ=255)                                                                     cgcgCTCCAATCTTGAGAAGCGATTTAAAGAAGAGGTGGGTGAAACCATCCATGACATGATTCATGCCAAGAAGATGGAGAAAGCGCGCAGTctgct                                                                                                            >  1:1611780/1‑97 (MQ=255)                                                                      gcgcTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCaa                                                                                                    >  1:363492/1‑104 (MQ=255)                                                                      gcgaTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGc                                                                 >  1:83297/1‑139 (MQ=255)                                                                        gcTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCgg                                                               >  1:1187526/1‑139 (MQ=255)                                                                        gcTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCgg                                                               <  1:2842176/139‑1 (MQ=255)                                                                          tCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg                                                                  <  1:257148/134‑1 (MQ=255)                                                                          tCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtg                                                                    <  1:2777043/132‑1 (MQ=255)                                                                           ccAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTa                                                            >  1:2077973/1‑139 (MQ=255)                                                                               tCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCACCCACCTTGTCGATCAATGAGATATCGCAAAtgtg                                                                  <  1:1002448/129‑1 (MQ=255)                                                                                cTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAACCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCAt                                                       <  1:2188697/139‑1 (MQ=255)                                                                                cTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCAt                                                       <  1:1775976/139‑1 (MQ=255)                                                                                cTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCAt                                                       <  1:1656684/139‑1 (MQ=255)                                                                                    agaAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATc                                                          >  1:1354116/1‑132 (MQ=255)                                                                                    agaAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCa                                                        >  1:1681550/1‑134 (MQ=255)                                                                                       aGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGc                                                 <  1:1752321/138‑1 (MQ=255)                                                                                         cGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAat                                              >  1:178225/1‑139 (MQ=255)                                                                                         cGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAat                                              >  1:57831/1‑139 (MQ=255)                                                                                         cGTTTTAAAGAAGAGGAGGGTGAAACCATTCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCa                                                        >  1:2425953/1‑129 (MQ=255)                                                                                           ttttAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAatat                                            >  1:589265/1‑139 (MQ=255)                                                                                                aagaagAGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg                                                                  <  1:1605181/112‑1 (MQ=255)                                                                                                 agaagaGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAgcgcg                                                                                                                     <  1:1383009/60‑1 (MQ=255)                                                                                                 agaagaGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCg                                                                                         <  1:185161/88‑1 (MQ=255)                                                                                                 agaagaGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGc                                                    <  1:2429526/125‑1 (MQ=255)                                                                                                   aagaGGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTAc                                      >  1:1388345/1‑137 (MQ=255)                                                                                                    agatGTGGCTGAATCCAGCCATGCCATTATTCATGCCAATAAGCTGGCGTAAGCGCGCAGTCTTCTGATTTCAACCACCTTTTCGATCTATTAGATATCCCAAATGTGCGTTTATCCATCGCTGCAATATTtcttct                                     <  1:563508/137‑1 (MQ=255)                                                                                                    agagGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTAct                                     <  1:2652862/137‑1 (MQ=255)                                                                                                    agagGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTAct                                     <  1:2686718/137‑1 (MQ=255)                                                                                                      agGTGGGTGAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGt                                                                                           <  1:2286160/81‑1 (MQ=255)                                                                                                          gggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGCGGAAGCGCGCAGTCTGCTGATTTAAACACACTTGTCGATCAATGAGATAGCGACAATGTGCGGTTATCCGTCGCTGCAATATTTCTACTTTGttttt                             >  1:1987663/1‑139 (MQ=255)                                                                                                          gggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCa                                                        >  1:180670/1‑112 (MQ=255)                                                                                                           ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTctgctg                                                                                                           >  1:2805905/1‑60 (MQ=255)                                                                                                           ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATgaga                                                                               >  1:1609665/1‑88 (MQ=255)                                                                                                           ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGc                                                 <  1:2383671/118‑1 (MQ=255)                                                                                                           ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATAttt                                          >  1:1006027/1‑125 (MQ=255)                                                                                                           ggtgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTa                            >  1:2337106/1‑139 (MQ=255)                                                                                                             tgAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtg                                                                    <  1:2013021/97‑1 (MQ=255)                                                                                                              gAAACCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaa                         <  1:92776/139‑1 (MQ=255)                                                                                                                aaCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATga                                                                                 >  1:862431/1‑81 (MQ=255)                                                                                                                aaCCATCCATGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaaaaaa                       <  1:2013390/139‑1 (MQ=255)                                                                                                                     tccatGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTa                                       >  1:960113/1‑118 (MQ=255)                                                                                                                     tccatGCCATGATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCata                  >  1:1611834/1‑139 (MQ=255)                                                                                                                      ccatgccatgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAAtgtg                                                                  <  1:1680962/90‑1 (MQ=255)                                                                                                                      ccatgccatgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTAct                                     <  1:1474169/119‑1 (MQ=255)                                                                                                                       catgccatgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATc                                                          >  1:588896/1‑97 (MQ=255)                                                                                                                          gccatgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACACTGTTTTTAAAAAAGCATATGac              >  1:2266274/1‑138 (MQ=255)                                                                                                                            catgATTCATGCCAAGAAGCTGGAGAAAGCGCGCATTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGacac            <  1:913464/138‑1 (MQ=255)                                                                                                                              tgATTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACacgac         <  1:1994519/139‑1 (MQ=255)                                                                                                                                aTTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCa                                                        >  1:256560/1‑90 (MQ=255)                                                                                                                                aTTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTaa                           >  1:49525/1‑119 (MQ=255)                                                                                                                                aTTCATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACacgacg        >  1:2717608/1‑138 (MQ=255)                                                                                                                                   cATGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCaa    <  1:2811236/139‑1 (MQ=255)                                                                                                                                     tGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCaaaa  >  1:95517/1‑139 (MQ=255)                                                                                                                                     tGCCAAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGCCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCaaaa  <  1:1507906/139‑1 (MQ=255)                                                                                                                                         |                                                                                                                                       GCATTACATTCGTAATCACGCCTGTAAAGGGATTAAAGTGGATCAGGTACTGGATGCGGTCGGGATCTCGCGCTCCAATCTTGAGAAGCGTTTTAAAGAAGAGGTGGGTGAAACCATCCATGCCATGATTCATGCCGAGAAGCTGGAGAAAGCGCGCAGTCTGCTGATTTCAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAA  >  CP009273/3729211‑3729481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑