| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 407,471 | C→T | W156* (TGG→TAG) | araJ ← | arabinose‑inducible putative transporter, MFS family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 407,471 | 0 | C | T | 100.0% | 147.4 / NA | 43 | W156* (TGG→TAG) | araJ | arabinose‑inducible putative transporter, MFS family |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (28/15); total (28/15) | |||||||||||
GGCCGGGCTGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCT > CP009273/407338‑407602 | ggCCGGGCTGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCt < 1:98800/138‑1 (MQ=255) cTGCGCAAAAAGTTAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCCCCCAAAAATCGACCGATGCCCTCACCCCAATATTAAAAACAGCTATCAATAAAAAGGTTTCACGCTAGCTAAATTCCt < 1:739082/139‑1 (MQ=255) tGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCt < 1:1969940/138‑1 (MQ=255) tGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCt < 1:2325594/138‑1 (MQ=255) cgcAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGc > 1:1930969/1‑127 (MQ=255) cgcAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCG‑ATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAAt > 1:2735787/1‑131 (MQ=255) gcAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACt < 1:145664/139‑1 (MQ=255) tCGCTCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCg < 1:2173827/139‑1 (MQ=255) gtcgCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACt < 1:971795/139‑1 (MQ=255) aaaaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCt < 1:1286495/75‑1 (MQ=255) aaaTAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATGcc < 1:2395491/72‑1 (MQ=255) cGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATa > 1:2709504/1‑75 (MQ=255) aTGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAAt > 1:971945/1‑72 (MQ=255) gCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCt < 1:282627/61‑1 (MQ=255) gCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACtttt > 1:2614959/1‑138 (MQ=255) cAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATa > 1:1706999/1‑61 (MQ=255) tatTAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACCTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCggg > 1:659649/1‑139 (MQ=255) atTAAAAACGGCGATCAAAAAAAGGGTGTAACGCTAGCAAAATCCCTGACTTAAATCCGTCCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAACCCACCCCCGCCACGGCGGCGGTGACTTTTCCGGGt < 1:1989270/139‑1 (MQ=255) tAAAAACAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGttt > 1:169535/1‑139 (MQ=255) aaaaCAGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGa > 1:1115566/1‑139 (MQ=255) aaaaCAGCGACCAAAAAAAAGGTGTAACGCTAGATAAATTCCTTACTAAAATCCGTTCCCAGCGGAATCCCCAGAAAATTGGCGTCTTTCATCCCGAAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGa < 1:2060046/139‑1 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAATTTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtt > 1:1351674/1‑139 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtt > 1:1117119/1‑139 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtt > 1:384752/1‑139 (MQ=255) cGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt > 1:1023069/1‑139 (MQ=255) cGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt > 1:132183/1‑139 (MQ=255) cGATCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt > 1:39480/1‑139 (MQ=255) cGATCAATAAAAAGGGGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCACAGCGGAATGCACAGCAAATTGGAGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt > 1:19/1‑139 (MQ=255) cGATCAATAAAAAGGAGTAACGCTAGCTAAATTCATGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGCAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGa > 1:1925528/1‑132 (MQ=255) gATCAATAAAAAGGTGTACCGCTAGCTAAATCCCTGACTTAAATACGTCCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCACCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAttttt < 1:1594055/139‑1 (MQ=255) gATAAAAAAAAGGGTGTACCGCTAGCTAAATCCCTGACCAAAATCCGTTCCCAGCGGAAGGCCCAGCAAATTGGCGACTGTCATCCCGAAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAttttt < 1:2083684/139‑1 (MQ=255) aTCAATAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTg > 1:635983/1‑139 (MQ=255) tAAAAAGGTGTAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAac > 1:2061563/1‑139 (MQ=255) tAAAAAGGGGCAACGCTAGCTAAATCCCTGCCTAAAATACGTCCCCAGGGGAATGCCCAGCAAATGGGCGACTTTCACCCCGAAAACCATCCCCGCCAcggcg < 1:813668/103‑1 (MQ=255) tgtAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATc > 1:2798472/1‑137 (MQ=255) tgtAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATc > 1:1846804/1‑137 (MQ=255) tgtAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATc > 1:756944/1‑137 (MQ=255) tgtAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCg > 1:2524460/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACtt > 1:2237472/1‑103 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCt > 1:1859503/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCt > 1:185980/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCt > 1:2647682/1‑138 (MQ=255) tAACGCTAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCt > 1:1863598/1‑138 (MQ=255) | GGCCGGGCTGCGCAAAAAGTGAAATTGTTCGCGCAGATTTCCTTTCGCCTCGTCGCGAATATCTGGCACCCAAAAATAGACCGATGCCATCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCT > CP009273/407338‑407602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |