| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 1,147,311 | A→C | intergenic (+4/‑84) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,147,311 | 0 | A | C | 95.1% | 151.7 / ‑1.6 | 41 | intergenic (+4/‑84) | acpP/fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (21/18); total (22/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.05e-01 | |||||||||||
CACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGAACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGACTGGGCATGTT > CP009273/1147187‑1147435 | cacCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCgg < 1:571158/139‑1 (MQ=255) acCGTTGAGCTGGTACTGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCACCGGCCACCAGGCGTAAGTGCACATCTCCcggcgg > 1:1995300/1‑138 (MQ=255) ttGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTACGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGt > 1:1729295/1‑138 (MQ=255) gTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGAc < 1:2834502/135‑1 (MQ=255) aaTGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCt < 1:357821/138‑1 (MQ=255) tGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGtt > 1:1411640/1‑135 (MQ=255) tGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTa > 1:1351831/1‑138 (MQ=255) tGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGGTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTa > 1:2515015/1‑138 (MQ=255) agagTTTGATACTGAGAGTCCGGACGAAGAAGCTGAGAAAATCTCCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGTCGGTCGTTCGACCGCCTGAGTTTTATCttttt < 1:83117/138‑1 (MQ=255) tttGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCtt < 1:2749883/131‑1 (MQ=255) tGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTccc > 1:1288133/1‑137 (MQ=255) tGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCAc < 1:2711138/139‑1 (MQ=255) tGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGaa > 1:515000/1‑138 (MQ=255) tGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAAt < 1:2180011/139‑1 (MQ=255) tGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAAt < 1:1939189/139‑1 (MQ=255) agaTTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCAc > 1:1326937/1‑131 (MQ=255) agaTTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCa > 1:1165582/1‑139 (MQ=255) agaTTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCa > 1:668801/1‑139 (MQ=255) ggACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCAtttttt > 1:2703720/1‑138 (MQ=255) gACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGc < 1:1173287/85‑1 (MQ=255) cGAAGAAGCTGAGAAAATCCCCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTtccct < 1:2588815/139‑1 (MQ=255) cTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGa > 1:2596509/1‑85 (MQ=255) tGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTggagg < 1:1091659/139‑1 (MQ=255) gaAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGAACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGAc < 1:577816/138‑1 (MQ=255) aaaaTCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACaa > 1:219749/1‑139 (MQ=255) aaaaTCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACaa > 1:132432/1‑139 (MQ=255) aaTCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAAc < 1:1852525/139‑1 (MQ=255) ccGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTaa > 1:209840/1‑139 (MQ=255) ccGTGCAGGCGGCCATTGATTACATCAACGGCCACCAGGCGTAAGGGCACATCTCCAGGCGGTCGGTCGACCGCCTGAGGTTTATCGTTTTGTCCCACGAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTaa < 1:1556992/139‑1 (MQ=255) cGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCt < 1:822655/75‑1 (MQ=255) ttCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGcg > 1:1347372/1‑139 (MQ=255) tCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGcg > 1:1923674/1‑138 (MQ=255) gCCATTGATTACATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATc > 1:2246438/1‑75 (MQ=255) cATTGATTACATCAACGGCCACCAGGCGTAAGTGAACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGtt > 1:508659/1‑139 (MQ=255) cATCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGa < 1:1634307/139‑1 (MQ=255) aTCAACGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGAc < 1:1280701/139‑1 (MQ=255) cGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGACTGGGc < 1:2452119/139‑1 (MQ=255) cGGCCACCAGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGACTGGGc > 1:2319575/1‑139 (MQ=255) ccaccaGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGAc < 1:896938/131‑1 (MQ=255) accaGGCGTAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGGGTAGTTGTGACCGGACTGGGCAtgtt > 1:1797542/1‑139 (MQ=255) tAAGTGCACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGACTGGGCAtgtt > 1:2320610/1‑131 (MQ=255) | CACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAATCACCACCGTTCAGGCTGCCATTGATTACATCAACGGCCACCAGGCGTAAGTGAACATCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTATCTTTTTGTCCCACTAGAATCATTTTTTCCCTCCCTGGAGGACAAACGTGTCTAAGCGTCGTGTAGTTGTGACCGGACTGGGCATGTT > CP009273/1147187‑1147435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |