| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP009273 | 103,910 | (CTTCCAGGAC)1→2 | coding (867/918 nt) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 103898 = | 9 (0.160) | 51 (0.970) | 23/128 | 0.6 | 86.7% | coding (855/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| ? | CP009273 | = 103907 | 7 (0.130) | coding (864/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase | |||||
ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/103967‑103898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < CP009273/103907‑103841 ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGG < 1:831082/68‑1ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGG < 1:1447306/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2147950/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4055284/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:704744/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:120959/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2027873/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2338866/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:1280349/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:1862639/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4179623/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:3629606/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:356074/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:4697833/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTCCGTCGTCCTGGAAGGT > 1:215710/1‑68 GCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGG < 1:4078147/68‑1 GCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGG > 1:600409/1‑68 GCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGG < 1:1049606/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT > 1:2680756/1‑68 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:3838138/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT > 1:220533/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:4049282/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:510304/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:1670253/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:4206794/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTAACAa > 1:3661013/1‑67 ACAGCTGAAGGCGCATTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:107031/1‑68 CAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATA > 1:2996041/1‑68 TGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCC > 1:1340112/1‑68 TGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCC > 1:2633949/1‑68 TGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCC > 1:3332831/1‑68 GGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGG < 1:190175/68‑1 GGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGG < 1:3392813/68‑1 GCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGC > 1:3121446/1‑68 GCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGC > 1:1583719/1‑68 GCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGC > 1:2178222/1‑68 GCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGC > 1:2749509/1‑68 GCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGC > 1:4448979/1‑68 TGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTG < 1:4692519/68‑1 AGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTT > 1:4395323/1‑68 GGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTC > 1:3169229/1‑68 CCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGC > 1:1624084/1‑68 CCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGC > 1:57910/1‑68 AACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCA > 1:1051108/1‑68 ACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAG < 1:122517/68‑1 GCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGAC > 1:2388442/1‑68 GCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGAC > 1:4512432/1‑68 GTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGC < 1:635659/68‑1 GTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGC > 1:2315802/1‑68 TCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCT < 1:3789920/68‑1 TCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCT < 1:81901/68‑1 ggCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGC < 1:109892/66‑1 GTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGC > 1:949331/1‑68 GTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGC > 1:155384/1‑68 GTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGT < 1:513198/68‑1 GTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGT < 1:4600410/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:1257031/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:1119989/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:785380/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:2447068/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:2869245/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:3904577/68‑1 CCTGGAAGGTCCTGGAAGGGCACATAATCCCAGGCAACCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:3916668/68‑1 CCTGGAAGGTCCTGCAAGGTCACATATTCCCAGGCTTCCTGTTTCCCCAGGACAGCCTGCAGCAGTTT < 1:928791/68‑1 TGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGT < 1:612364/68‑1 TGGAAGGGCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGT < 1:183046/68‑1 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < 1:657330/68‑1 ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/103967‑103898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < CP009273/103907‑103841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |