New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1590464	74 (1.340)	12 (0.220)	5/134	4.2	14.0%	pseudogene (1781/5323 nt)	yneO	pseudogene, AidA homolog
	?	CP009273	= 1645805	NA (NA)					intergenic (+11/‑3)	insD1/intQ	IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1590422‑1590464 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT  <  CP009273/1645805‑1645739                                                                                                                GTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCACTGGATTTGCCCCTATATTTCCAGAC                                            >  1:1767143/1‑68          GCAGGCTCAAAAACACCTAAGTAAACTTCTCCACTGGATTTGCCCCTATATTTCCAGACATCTGTTAT                                   >  1:1921763/1‑68             GGCTCAAAATCACCTAAGTAAACTTCTCCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAC                                <  1:1089346/68‑1                       CACCTAAGTAAACTTCTCCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATT                      <  1:3955979/68‑1                       CACCTAAGTAAACTTCTCCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATT                      <  1:4295419/68‑1                                        CCACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCA     <  1:630950/68‑1                                        CCACTGGATTTGCCCCTATAATTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCA     <  1:1430357/68‑1                                          ACTGGGTTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGA   <  1:4768436/68‑1                                          ACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGA   >  1:1873054/1‑68                                          ACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGA   <  1:2654148/68‑1                                           CTGGATTTGCCCCTATATTTCCAGACATCTGTTATCTCTTAACCCATTACAAGCCCGCTGCCGCAGAT  <  1:2220493/68‑1                                           CTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT  <  1:458207/68‑1                                                                                                                GTTCCTACAGCAGGCTCAAAAACACCTAAGTAAACTTCTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1590422‑1590464 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT  <  CP009273/1645805‑1645739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.