| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2400028 | 2400036 | 9 | 54 [0] | [0] 54 | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2400027 | 0 (0.000) | 49 (1.010) | 24/118 | 0.4 | 100% | coding (94/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | 2400037 = | 0 (0.000) | coding (84/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
TCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2399954‑2400027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGA > CP009273/2400037‑2400103 TCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGC < 1:2381622/68‑1TCTATCCCAACGAGCTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGC < 1:863035/68‑1 CTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCG < 1:2860398/68‑1 TCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCA < 1:4103444/68‑1 TCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCA < 1:2511654/68‑1 CCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAG > 1:699320/1‑68 CCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAG > 1:3404270/1‑68 CCCAACGAGTTGTTCCAGACGCTGCAATTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAG > 1:2239881/1‑68 ACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAA < 1:953928/68‑1 ACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAA < 1:668208/68‑1 tGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACTCACAGCGGCAGCAAAAGT < 1:2902526/67‑1 AGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGT < 1:614688/68‑1 AGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGT > 1:4008690/1‑68 TCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAG > 1:2887150/1‑68 TCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAG > 1:1192000/1‑68 CAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGAT < 1:1509298/68‑1 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG < 1:82855/68‑1 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:4128030/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:1619412/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:3969000/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG < 1:3811610/68‑1 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:3766897/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG < 1:3749433/68‑1 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:3667549/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:3026359/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:2178577/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG < 1:2473011/68‑1 GCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCA > 1:4705701/1‑68 GCATTTGCGGTCTTACGGCGGACTGAGTACGAGACACAGCGGAAGCAAAAGTGTTCAGATCGGCAACA < 1:772529/68‑1 ATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGC < 1:3592261/68‑1 TTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCA < 1:751510/68‑1 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:1696453/68‑1 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:1755565/68‑1 CTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAA > 1:3115186/1‑68 CTTATGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:4140672/68‑1 CTTACGGCGGACTGAGTCCGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:3630637/68‑1 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:3637030/68‑1 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:3118353/68‑1 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:571179/68‑1 TACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTC < 1:3786664/68‑1 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA < 1:4144495/68‑1 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCTGCAACAGCAACAAATGTTCTCAGCAGA < 1:4281275/68‑1 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA > 1:2331839/1‑68 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA > 1:294840/1‑68 CTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAT < 1:4110034/68‑1 TACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGG < 1:3119555/68‑1 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:1730278/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:2603297/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:3149142/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGATCTCAGCAGATCGAGGTCGA > 1:3558644/1‑68 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAGCAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:1653172/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:2130665/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:3341465/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:3014624/68‑1 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACATATGTTCTCAGCAGATCGAGGTCGAGG < 1:638771/68‑1 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGG > 1:2079777/1‑68 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGG > 1:1032573/1‑68 GCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAT > 1:4294746/1‑68 GCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAT > 1:4212892/1‑68 GCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTAT < 1:1101478/68‑1 AGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCG > 1:1636811/1‑68 CAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGTAGATCGAGGTCGAGGTTAATTATCGGA > 1:2268065/1‑68 TCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2399954‑2400027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGA > CP009273/2400037‑2400103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |