| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2400028 | 2400036 | 9 | 75 [0] | [0] 75 | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2400027 | 0 (0.000) | 69 (1.120) | 33/118 | 0.2 | 100% | coding (94/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | 2400037 = | 0 (0.000) | coding (84/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
TCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2399958‑2400027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGA > CP009273/2400037‑2400103 TCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCA < 1:5543465/68‑1TCCCAACGAGGTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCA < 1:2548493/68‑1 CCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAG > 1:1110280/1‑68 ACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAA < 1:5041085/68‑1 ACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAA < 1:4847823/68‑1 CGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACCGCGGCAGCAAAA > 1:6011384/1‑68 GAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTCCGACACACAGGGGCAGCATAAG > 1:5396101/1‑68 tGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGT < 1:2052810/67‑1 AGTTGTTCCAGACGCTGCATTTCCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGT < 1:4613021/68‑1 TTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGT < 1:776861/68‑1 TTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGT < 1:3416096/68‑1 TTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCA < 1:5213571/68‑1 TTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCA < 1:4441446/68‑1 TCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACCCAGCGGCCGCAAAAGTGGTCAG > 1:2013605/1‑68 TCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCct > 1:6213507/1‑66 TCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAG > 1:1456996/1‑68 CAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGAT < 1:364054/68‑1 AGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATC > 1:1982705/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:5222445/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG < 1:3224317/68‑1 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:2641925/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:120324/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:2403680/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGAAACACAGCGGCCGCAAAAGTGTTCAGATCGG > 1:5644303/1‑68 CGCTGCATTTGCTGACTTTCGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGC > 1:653036/1‑68 tCATTTGCTGACTTACTGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACA < 1:2848302/67‑1 GCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACA < 1:1503637/68‑1 TTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAATGTGTTCAGATCGGCAACAGCA < 1:3259790/68‑1 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:4943701/68‑1 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:3525701/68‑1 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:513647/68‑1 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTTAGATCGGCAACAGCAACAAATGT < 1:1223020/68‑1 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:2107194/68‑1 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:2854313/68‑1 TACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTC < 1:5291191/68‑1 CGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTC < 1:508462/68‑1 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA > 1:310907/1‑68 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA > 1:6175600/1‑68 CGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGC > 1:5261884/1‑68 CGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGC > 1:4794289/1‑68 GGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCA < 1:133175/68‑1 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA < 1:2733838/68‑1 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA < 1:1946592/68‑1 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA < 1:2602019/68‑1 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA > 1:1224343/1‑68 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA > 1:282503/1‑68 GTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAG > 1:4016360/1‑68 TACGTCACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGG < 1:3267500/68‑1 ACGACACACTGCGGCAGCAAAAGTGTTCAGATCGGCAACTGCAACAAATGTTCTCAGCAGATCGAGGT < 1:2163954/68‑1 ACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGT < 1:2448509/68‑1 ACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGT < 1:4075086/68‑1 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:5407933/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:2916416/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA < 1:77051/68‑1 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:4627973/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:4654186/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:155093/1‑68 ACACACAGCGGCAGCAAAAGAGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:4241904/1‑68 ctCACAGCGGCAGCAAAAGTGTTCAGATCGGCTACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:420427/66‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:5311909/68‑1 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCACCAAATGTTCTCAGGAGATCGAGGTCGAGG > 1:2066041/1‑68 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGG > 1:2809509/1‑68 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGGCGAGG < 1:3375522/68‑1 agCAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:232029/66‑1 CACCGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:1447407/68‑1 CACAGCGGCAGGAATAGTGTTCAGTTCGGCATCAGCTACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:4427379/68‑1 CACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:3909170/68‑1 CACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:3256718/68‑1 CACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:4573826/68‑1 CACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:2837830/68‑1 ACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCGGCAGATCGAGGTCGAGGTT > 1:2614280/1‑68 ACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGat > 1:2309572/1‑66 GCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTTAT > 1:2427586/1‑68 CGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATT < 1:2873540/68‑1 GGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTA > 1:2225706/1‑68 GCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTAT > 1:1460803/1‑68 CAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGA < 1:1435978/68‑1 CAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGA < 1:4721266/68‑1 TCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2399958‑2400027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGA > CP009273/2400037‑2400103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |