| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4161725 | 23 (0.330) | 9 (0.000) | 4/122 | 4.3 | 1.7% | intergenic (+41/‑260) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | Exported | = 2325 | 1007 (0.060) | intergenic (+91/–) | fdh/– | formate dehydrogenase from Pseudomonas sp. 101 with an N‑terminal his‑tag/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTC > CP009273/4161658‑4161743 | aTGCGAGAGTAGGGACCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCg < 1:5794221/68‑1 (MQ=25)aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCg < 1:5982266/68‑1 (MQ=35)aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACCAAACGCTCAGTCGAATGACTGGGCCTTTCg < 1:4687801/68‑1 (MQ=11) tGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGt > 1:440301/1‑68 (MQ=35) tGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGt > 1:4353998/1‑68 (MQ=35) cGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt > 1:5352188/1‑68 (MQ=35) cGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt > 1:245394/1‑68 (MQ=35) cGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt > 1:4578562/1‑68 (MQ=35) cGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGtct > 1:4810506/1‑66 (MQ=25) agagTCGGGAACTGCCAGGCATCAAAAAAAACGAAAGGCTCAGTCGAAAGACGGGGCCTTTCGTTTTa < 1:4999947/68‑1 (MQ=11) agagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTa < 1:4258570/68‑1 (MQ=35) gagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAt > 1:1695162/1‑68 (MQ=35) gagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAt < 1:1964394/68‑1 (MQ=35) agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATc > 1:957942/1‑68 (MQ=35) gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAATGCCTGGGCCTTTCGTTTTATCt > 1:1497206/1‑68 (MQ=255) gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCt > 1:433460/1‑68 (MQ=35) gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCt > 1:3766465/1‑68 (MQ=35) gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCt < 1:4965764/68‑1 (MQ=35) gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCt > 1:5660192/1‑68 (MQ=35) aGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgt < 1:6189330/68‑1 (MQ=35) ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgttg > 1:3505707/1‑68 (MQ=35) aCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 1:3913123/1‑68 (MQ=35) aCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 1:4814653/1‑68 (MQ=35) aCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 1:1833349/1‑68 (MQ=35) aCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTGTCGTTTTATCTGttgttt > 1:2213561/1‑68 (MQ=25) gCCAGGCATCAAATTAAACGAAAGGCTAAGTCGAAAGACTGGGCCTTTCGTTTTATCTGGTGTTTGTc > 1:5842943/1‑68 (MQ=11) | ATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTC > CP009273/4161658‑4161743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |