| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP009273 | 354,080 | Δ9 bp | coding (314‑322/900 nt) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 354079 | 1 (0.010) | 39 (0.560) | 29/134 | 0.5 | 97.5% | coding (323/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
| ? | CP009273 | 354089 = | 1 (0.010) | coding (313/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor | |||||
ATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGA > CP009273/354022‑354156 | tcctgcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaagga < 1:799566‑M2/1‑1 (MQ=255) cctgcgacttttcctgtagctggcgcgtgatgctgggatagcgcgcatagaaatccgccatttaggAg > 1:828630‑M2/67‑68 (MQ=255) gcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAg < 1:2513868‑M2/5‑1 (MQ=255) gcgacattgagtgtagctggagcgtgatgcttggttagcgggcatagaaatccgccattaaggAGTAg < 1:706794‑M2/5‑1 (MQ=255) ccgacatttcctgtagcgggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAg < 1:931569‑M2/5‑1 (MQ=255) cTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCTTAGAAATCCGCCATTAAGGGGCCGATAAAGTAGc > 1:4516674/1‑68 (MQ=255) gacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCt > 1:421582‑M2/62‑68 (MQ=255) acatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTc < 1:2463659‑M2/8‑1 (MQ=255) acatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTc < 1:2327107‑M2/8‑1 (MQ=255) catttcctgtagctggagcgtgatgctgggatagcgcgcatagaactccgccattaaggAGTAGCTCg > 1:452709‑M2/60‑68 (MQ=255) catttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCg < 1:769927‑M2/9‑1 (MQ=255) atttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGt > 1:3302378‑M2/59‑68 (MQ=255) ttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTaa > 1:5366668‑M2/57‑68 (MQ=255) tcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTaaa < 1:2310446‑M2/13‑1 (MQ=255) gtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTg > 1:6108340‑M2/52‑68 (MQ=255) gtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTg > 1:4396844‑M2/52‑68 (MQ=255) agctggagcgtgatgctgggatagcgcgcatagaattccgccattaaggAGTAGCTCGTAAAGGTggg > 1:5279750‑M2/50‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg > 1:2492392‑M2/49‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg < 1:4343529‑M2/20‑1 (MQ=255) ctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTggggg > 1:2376754‑M2/48‑68 (MQ=255) gcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACg < 1:3082584‑M2/26‑1 (MQ=255) gcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACg < 1:4899868‑M2/26‑1 (MQ=255) cgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTTACgg > 1:2723087‑M2/42‑68 (MQ=255) gtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGc < 1:1718163‑M2/28‑1 (MQ=255) gatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGTGGGTGACGGCGa > 1:5777602‑M2/39‑68 (MQ=255) tgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGc > 1:6196356‑M2/34‑68 (MQ=255) gggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCa > 1:3734‑M2/33‑68 (MQ=255) gatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGc > 1:287599‑M2/31‑68 (MQ=255) gatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGc > 1:5599340‑M2/31‑68 (MQ=255) agcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGAt > 1:4254504‑M2/28‑68 (MQ=255) cgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATcc > 1:3651765‑M2/26‑68 (MQ=255) gcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTcg < 1:4071836‑M2/46‑1 (MQ=255) atagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTcgcg < 1:2133098‑M2/48‑1 (MQ=255) aatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGa < 1:5783332‑M2/53‑1 (MQ=255) ttaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAca < 1:99665‑M2/62‑1 (MQ=255) ttaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAca < 1:1927449‑M2/62‑1 (MQ=255) ttaaggAGTAGCTCGTAAAGGGGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAca < 1:2720424‑M2/62‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:4273419‑M2/63‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:3659930‑M2/63‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGGGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:4391558‑M2/63‑1 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCATGATCATGa > 1:3189133/1‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCACCATCATGa > 1:5367877/1‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:557701/1‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:4547589/1‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:631994/1‑68 (MQ=255) | ATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGA > CP009273/354022‑354156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |