| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360232 = | 89 (1.270) | 9 (0.010) | 4/122 | 4.3 | 17.0% | intergenic (‑166/+429) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | KX077536 | = 8154 | 7 (0.000) | intergenic (+79/–) | unknown/– | cat/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 237 total aligned reads displayed.
CGGCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGT‑T > KX077536/8086‑8187 | cgGCCGCTGCAGCCCGGGGGATCCCATGGTACGCGT‑CTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:2552712/68‑1 (MQ=255) ggCCGCTGCAGCGCTGGGGATTCCATCGTAAGCGTGGTAGAGTCATCAAATACAACGTTAGGCTTAGt < 1:2304301/68‑1 (MQ=255) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCTTCAAATAAATCGAAAGGCTCAGt < 1:6031335/68‑1 (MQ=255) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAGCGAAAGGCTCAGt < 1:3335075/68‑1 (MQ=255) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:3645522/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4295274/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:483278/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:6127591/68‑1 (MQ=255) gacGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5651070/66‑1 (MQ=18) gCCGCTGGTGCCCGGGGGATCCCATGGTAGGCGTGCTAGAGTCATCAAATAAAACGAAAGGCTCAGTc < 1:5726725/68‑1 (MQ=11) gCCGCTGGAGCGCGGGGGATCCCATTGTTCTCGTGCTAGCGGCAGCAAATAAAACGACAGGCTCAGTc < 1:2371992/68‑1 (MQ=11) gCCGCTGCTGCCGGGGGGTTCCCATGGTAAGCGTGCTAGAGGCATCAAATAAAACGAATGGCTAAGTc < 1:848291/68‑1 (MQ=11) gCCGCTGCTGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:355629/68‑1 (MQ=255) gCCGCTGCAGCCCGGTGGATCACATGGTTCGCGTGCTAGAGGCATCATATAATAAGAAATGCTCAGta < 1:2724812/68‑2 (MQ=11) gCCGCTGCAGCCCGGGGGATCCCATGGTAGGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4698210/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGTGGCATCAAATAAAACGAAATGCTCAGTc < 1:193013/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCTTCAAATAAAACGAAAGGCTCAGTc < 1:285597/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAACCGAAAGGCTCAGTc < 1:4931602/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3841000/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5903335/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4658934/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:457887/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4390398/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:776144/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4215365/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4014344/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3920869/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5516095/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:786855/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3791757/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3707930/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3683374/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1061244/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3582864/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4669496/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5943067/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5745092/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:473210/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:66437/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:6212921/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4855249/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:6195558/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:6153924/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4890649/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5070928/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5127873/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5174158/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5311727/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5357056/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5405147/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1277570/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1467180/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1546640/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1595452/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1420875/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1761974/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1839804/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1951201/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2077829/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1312326/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:219005/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2227814/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2233309/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2458774/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2585699/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2623323/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3500286/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2874838/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1195425/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3420677/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:340340/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1146899/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:30640/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1089295/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3308271/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:327161/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3186937/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCGCAGTc < 1:2095307/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGACGCATCAAATAAAACGACAGGCTCAGTc < 1:1676183/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCAAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2823351/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGAGGCATCAAATAAAACGACAGGCTCAGTc < 1:3352272/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5701796/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5017853/68‑1 (MQ=255) gCCGCTGCAGCCCCGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1033479/68‑1 (MQ=255) gCCGCGGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1725754/68‑1 (MQ=25) gCCGCGGCAGCCCGGGGCATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGCAAGGCTCAGTc < 1:2692476/68‑1 (MQ=11) gCCGATGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:721261/68‑1 (MQ=18) cgtgCTGCCGCCCGGGGGATGCCATGGTACGCGTGCTAGAGGCATCAAAAAAAACGAAAGGCTCAGTc < 1:560215/65‑1 (MQ=11) cgtgCTGCAGCCCGGGGGAGCCCATGGTACGCGTGCTAGAGGCATCAAAAAAATCGAAAGGCTCAGTc < 1:2005026/65‑1 (MQ=11) cgcGCTGCAGCCCGGGGGATCCCTTTGTACGCGTGCTAGAGGCATCAAATAAATCGAAAGGCTCAGTc < 1:5915189/66‑1 (MQ=11) acagCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:880500/65‑1 (MQ=14) acagCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5255649/65‑1 (MQ=14) acagCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4175629/65‑1 (MQ=14) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:1690508/1‑68 (MQ=35) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:2274292/1‑68 (MQ=35) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:3155744/1‑68 (MQ=35) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:3494506/1‑68 (MQ=35) gCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGaa < 1:4428194/68‑1 (MQ=31) gCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGaa > 1:2996389/1‑68 (MQ=31) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtggtggtt > 1:2900035/1‑65 (MQ=0) | CGGCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGT‑T > KX077536/8086‑8187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |