| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP009273 | 103,910 | (CTTCCAGGAC)1→2 | coding (867/918 nt) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 103898 = | 5 (0.090) | 37 (0.680) | 21/128 | 0.6 | 91.6% | coding (855/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| ? | CP009273 | = 103907 | 2 (0.040) | coding (864/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase | |||||
ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/103967‑103898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < CP009273/103907‑103841 ATGTCTTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGG < 1:5257793/68‑1ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGG > 1:5014/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGATGGT > 1:950166/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:2592567/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:1317211/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2887653/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2975014/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:3760235/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:3842917/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:4078100/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4122017/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4611102/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4837331/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4904350/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4942592/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:5017237/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:5532647/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:1723609/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2010525/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCATTG‑AGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC > 1:929406/1‑68 GCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGG < 1:2806822/68‑1 GCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGG < 1:3536180/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:1473890/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:4727883/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:3947924/68‑1 AGTACACCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCA < 1:145347/68‑1 GTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCAC < 1:2460264/68‑1 TACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACA < 1:2427581/68‑1 TACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACA > 1:2698604/1‑68 TACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACA < 1:3249466/68‑1 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAa > 1:4359287/1‑67 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:1678649/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:2276016/1‑68 AGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATAT < 1:2650812/68‑1 GCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATT < 1:684477/68‑1 GCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATT < 1:3656531/68‑1 TGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCC > 1:4821406/1‑68 GGCGCTTTGAAGGCCACCGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGG > 1:2112214/1‑68 GGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGCAAGGTCCTGGAAGGTCACATATTCCCAGG < 1:3622201/68‑1 GCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCG < 1:14039/68‑1 CCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGC > 1:2499701/1‑68 CCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGC > 1:1910912/1‑68 CCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGC > 1:2304335/1‑68 CGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGG < 1:176023/68‑1 GCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGAC > 1:42686/1‑68 GTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGC < 1:5131131/68‑1 GTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGC < 1:2282411/68‑1 TCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAAATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCT > 1:1912539/1‑68 GTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGT < 1:5022756/68‑1 GTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTCTTTCGCCAGGACAGCCTGCAGCAGT < 1:1138416/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:5546888/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:4296160/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:3301902/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:2491457/68‑1 AAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTAT > 1:5113544/1‑68 AAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTAT > 1:1531114/1‑68 AAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTAT > 1:3947599/1‑68 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < 1:4782849/68‑1 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < 1:4751905/68‑1 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < 1:4453/68‑1 ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/103967‑103898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < CP009273/103907‑103841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |