| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3576788 = | NA (NA) | 53 (0.930) | 36/134 | 0.1 | 100% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | CP009273 | = 4209762 | 0 (0.000) | coding (1239/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576853‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < CP009273/4209762‑4209696 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCACTAAGTTGCCAGCATCACCAt > 1:5061829/1‑67 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAG < 1:198499/68‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGA > 1:602335/1‑68 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGC < 1:3185753/68‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAAT < 1:5129734/68‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCA < 1:2199351/68‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA < 1:4134125/68‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA < 1:3510093/68‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA < 1:3293584/68‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCCTGCCCAAGATGGCGAATCACAA > 1:5299826/1‑68 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAA < 1:3047572/68‑1 ACCTCAAAAACTCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATT > 1:2679946/1‑68 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATT > 1:1760440/1‑68 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATT > 1:611096/1‑68 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGC < 1:5220820/68‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCTTCCGCAAGATGGCGCATCACAATTTGTTCGCC > 1:2663589/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCC > 1:1982302/1‑68 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCG < 1:13769/68‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCG < 1:670830/68‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA < 1:557785/68‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA > 1:1836988/1‑68 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA < 1:1558863/68‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA > 1:1359606/1‑68 CACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGAT > 1:334775/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:2968790/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:2427941/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:4012115/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:3329215/1‑68 CTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTT > 1:3525381/1‑68 CTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTT > 1:3717799/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:1259093/1‑68 CAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCG > 1:1056721/1‑68 TAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTG > 1:4982959/1‑68 TAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTG > 1:4729866/1‑68 TAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTG > 1:4613285/1‑68 AAGTTGGCAGCATCACCAAGATGGCGAATCACTATTTGTTCGCCGAGATCGGTGATTTTTTCCGGTGC < 1:3699059/68‑1 AAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGC < 1:3428379/68‑1 AGTTGGCAGCATCACCAAGATGGCGATTCACAATTTGTTCGCCGAGCTCGGTGATTTTTTCCGCTGCT > 1:1946498/1‑68 AGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCT > 1:471503/1‑68 GTTGCCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTT < 1:906813/68‑1 TTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTC < 1:2495542/68‑1 GGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGCTCGGTGATTTTTTCCGCTGCTTCCT > 1:3025902/1‑68 GGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCT < 1:61079/68‑1 CAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGA < 1:1534536/68‑1 AGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAA < 1:4186402/68‑1 GCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGGTCGGTGATTTTTTCCGCTGCTTCCTGAAG > 1:4076482/1‑68 CATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGC < 1:38679/68‑1 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA < 1:3972397/68‑1 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA < 1:689212/68‑1 TCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAG > 1:3364305/1‑68 TCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAG > 1:2216696/1‑68 ACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCAGAAGCAGTA > 1:4018556/1‑68 CAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < 1:3507628/68‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576853‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < CP009273/4209762‑4209696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |