| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360232 = | 60 (1.060) | 3 (0.000) | 3/122 | 4.0 | 0.44% | intergenic (‑166/+429) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | Exported | = 2325 | 1315 (0.060) | intergenic (+91/–) | fdh/– | formate dehydrogenase from Pseudomonas sp. 101 with an N‑terminal his‑tag/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATT > CP009273/360181‑360293 | ggaggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 1:399366/4‑68 (MQ=1) gagttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc < 1:3425631/65‑1 (MQ=1) ttctCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:94288/65‑1 (MQ=1) tggcctcctCAGGATAGGGTGCACCGACAAACTACAGATAACACGATCGGCCCAGTCTTTCGACTGAg < 1:434885/65‑1 (MQ=0) tggccTATTCAGGAGAGCGTTCAACGACAAACAACAGATAAAACGAATGGCCCAGTCTTTCGACTGAg < 1:4270296/65‑1 (MQ=1) tggccTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1415321/65‑1 (MQ=1) tggccTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:4693734/65‑1 (MQ=1) tgcccTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1668342/65‑1 (MQ=1) tgaccTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:2140176/65‑1 (MQ=1) ccaaCTCGGGAGAGCGTTCACCGACAAACAACTGATTCATCGAAAGGCGCAGTCTTTCGACTGAGCCt < 1:76893/65‑1 (MQ=1) ccaaCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt > 1:1401919/4‑68 (MQ=1) tctggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTTAGCCTTTCGt < 1:2674481/65‑1 (MQ=0) tccggAGCGCGGTCACCGACAAACACCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:4003317/65‑1 (MQ=1) tccggAGAGCGTTCACCGCCAAACAACAGATAAAACGACAGGCCCAGGCATTCGACTGAGCCTTTCGt < 1:3995073/65‑1 (MQ=1) tccggAGAGCGTTCACCGACAAACAACAGATAAACCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:2105528/65‑1 (MQ=0) tccggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:2006394/65‑1 (MQ=1) tccggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:4123958/65‑1 (MQ=1) tccggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCATTCGACTGAGCCTTTCGt < 1:5194664/65‑1 (MQ=0) tccggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGCCTTTCGACTGAGCCTTTCGt < 1:3990840/65‑1 (MQ=0) tccggAGAGCGTTCACCGACAAACAACAGATAAAACGAAACGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:2918739/65‑1 (MQ=0) tccggAGAGCGTGCACCGACAAACAACAGATAAACCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:5281673/65‑1 (MQ=1) tccggAGAGCGGTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:489631/65‑1 (MQ=0) tccggAGAGCGATCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:983943/65‑1 (MQ=0) tccggAGAGCCGTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:895588/65‑1 (MQ=1) cacgagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt < 1:4777847/65‑1 (MQ=1) agcagagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:2012192/65‑1 (MQ=1) ggtgagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGattt > 1:5081491/4‑68 (MQ=0) ggcgagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:2933054/65‑1 (MQ=1) gacagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 1:1156052/65‑1 (MQ=1) agtgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:2333669/4‑68 (MQ=1) agggCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:5194591/4‑68 (MQ=1) agggCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:2110768/4‑68 (MQ=1) agggCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:5442872/65‑1 (MQ=1) agcgcgcTCACCGACAAACAACAGATAAAACGAACGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:686388/65‑1 (MQ=1) agcgCGTTGACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGCCTGAGCCTTTCCTTTTAt > 1:4865016/4‑68 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGCCTGAGCCTTTCGTTTTAt > 1:1634270/4‑68 (MQ=0) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGCCTGAGCCTTTCGTTTTAt > 1:346119/4‑68 (MQ=0) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:5483711/4‑68 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:4963185/4‑68 (MQ=1) gaccGTTCCCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt < 1:4662290/65‑1 (MQ=0) cgctCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa < 1:5426763/65‑1 (MQ=1) cagcGACTAACTACAGATATTACGTATGGCCCTGTCTTTCGACTGAGCCTTTCGTTTTATTTGTTGcc < 1:4907621/65‑1 (MQ=0) cagcGACAAACAACCGATAAACCGAAAGGCCCAGGCTTTCGACTGAGCCTTTCGTTTTATTTGATGcc < 1:2930175/65‑1 (MQ=1) acagACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCt < 1:2839772/65‑1 (MQ=1) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:5253353/68‑1 (MQ=31) acaaacaaCAGATAAGACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg < 1:1349777/68‑1 (MQ=18) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg < 1:1180908/68‑1 (MQ=33) caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:5335598/68‑1 (MQ=35) caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:5642491/68‑1 (MQ=35) caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:3808358/68‑1 (MQ=35) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa > 1:4882209/1‑68 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:2201512/68‑1 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:4200643/68‑1 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:2569816/68‑1 (MQ=37) aacaacAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:5453837/68‑1 (MQ=39) acaGATAAAACGAAAGGCCCAGTCTTTCGACTGCGCCTTTCGTTTTATTTGATGCCTGgggaattggg > 1:1586267/1‑68 (MQ=255) acaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg > 1:3602816/1‑68 (MQ=255) caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggga < 1:9156/68‑1 (MQ=255) caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggga < 1:3169887/68‑1 (MQ=255) aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGTTGCCTGgggaattgggaatt > 1:4814341/1‑68 (MQ=255) | GGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATT > CP009273/360181‑360293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |