| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 87.5% | 44.3 / ‑2.8 | 17 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (5/9); total (6/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 87.5% | 46.8 / ‑3.0 | 17 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (5/9); total (6/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
TTGTAGGTCGGATAAGGCG‑TTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TA‑‑‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTT‑C‑GGGAAATTGCAGAGCTGCGTTTGAAAT‑ACCAGGTTGCCTTGTCATCGTCGGCCTTAATGC > NC_000913/4296245‑4296656 || ttGTAGGTCGGATAAGGCGTTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TTACG‑‑‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAAct > 1:1569178/1‑219 (MQ=255) aaGGCG‑TTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCtt < 1:1569177/231‑1 (MQ=255) cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATc > 1:1569179/1‑191 (MQ=255) ttATCAGGCCTACGCCAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTTCC‑GGGAAAt > 1:1569182/1‑297 (MQ=255) aTCAGGCCTACGCCAGACAGC‑GCAATAGCCTGA‑TTAGCGTGATTTTGTAGGTC‑GATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑AT‑CGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAGTACTCGGAAT‑ACCGGTT‑C‑GGGAAATTGCAGAGCTGCGtt > 1:643957/1‑304 (MQ=37) ggCCTACGCCAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAg < 1:1569181/263‑1 (MQ=255) cGCCAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGTCG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCTGGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑‑TTTTCAAACTCTTCACACCCGGTATCAAA‑CCTTCC‑ATACAGCTCAGGTTc > 1:1569188/1‑182 (MQ=18) ccAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTC‑GATAAGG‑CGTTTT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCGTTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCAATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TT‑‑AGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTT‑C‑GGGAAATTGCAGAGCTGCGTTTGAAAT‑ACCAGGTTG‑CTTGTCATCGTC‑GCCTTAATGc > 1:643961/1‑334 (MQ=38) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑‑TTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACcttc < 1:1569183/213‑1 (MQ=255) tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑‑TTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGcc < 1:1569184/238‑1 (MQ=255) aGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAg < 1:1569186/241‑1 (MQ=255) aGCCTGATTTAGCGTGA‑TTTGTAGGTCGGAT‑AGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAg < 1:1569185/239‑1 (MQ=255) cTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAA‑CGTTG‑‑TAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTCTTTCTCGATAAAACCTTCTTCACCGTTTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTT‑CGGGGAAATTGCag < 1:643959/269‑1 (MQ=37) tttAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TTACG‑‑‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑‑TTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTc < 1:1569187/157‑1 (MQ=21) gacGTGATTTTGTAGGTCGGATAAGC‑TG‑‑TT‑GATCAGCCGCTATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGc < 1:1569189/166‑1 (MQ=25) gTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTT‑C‑GGGAAATTGCAGAGCTGCGTTTGAAAT‑ACCAGGTTGCCTTGTCA‑CGTCGGCCtt < 1:1569190/301‑1 (MQ=255) aTTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TACG‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑‑TTTTCAAACTCTTCACACCCGGTATCAAA‑CCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTT‑C‑GGGAAATTGCAGAGCTGCGTTTGAAATAACCAGGTTGCCTTGTc < 1:643962/286‑1 (MQ=255) || TTGTAGGTCGGATAAGGCG‑TTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGC‑GCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑CG‑‑TT‑TA‑‑‑‑CCGC‑ATCCGACATCAATGCCT‑GATGCGACGCTTGCCGCG‑TCTTATCAGGCCTATCTTAACCGTTGGTTAA‑TTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCC‑ATACAGCTCAGGTTCAACCAGTGCAGCGCC‑TTTTGCTTGTTC‑TTCTCGATAAAACCTTCTTCACCG‑TTTAAGAACATCATTCCCGCCCAGTACTCGGAATAACCGGTT‑C‑GGGAAATTGCAGAGCTGCGTTTGAAAT‑ACCAGGTTGCCTTGTCATCGTCGGCCTTAATGC > NC_000913/4296245‑4296656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |