| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2644811 | 20 (0.330) | 20 (0.330) +TTT |
16/370 | 2.1 | 50.0% | coding (54/432 nt) | ndk | nucleoside diphosphate kinase |
| ? | NC_000913 | 2644812 = | 20 (0.320) | coding (53/432 nt) | ndk | nucleoside diphosphate kinase | |||||
TCGCGAGCGGCAGATTCGACGGAATCAGAACCGTGGGTACCGTTTTCGGTC‑AGGCTGTCAGCGTAATCAGCGCGCAGAGTACCAGCCAGTGCGTTTGCCGGATTGGTCGCGCCCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2644482‑2644811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTGCTACCGCGTTCGG‑TTTGATGATGGAAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGATTATAA‑TGAGCAACAGGGCCGTTGACTATTGATGAAGGTAACATTTTTTTAAAATAAAATGA > NC_000913/2644812‑2644983 ||||||| TCGCGAGCGGCAGATTCGACGGAATCAGAACCGTGGGTACCGTTTTCGGTCGAGGCTGTCAGCGTAATCAGCGCGCAGAGTACCAGCCAGTGCGTTTGCCGGATTGGTCGCG‑CCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAG‑ACGG‑‑TTTCCATCGT‑GTTCAGCAT‑‑‑‑AAG‑CACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑TTTTTTTgc > 1:451286/1‑332 TCGACGGAATCAGAACCGTGGGTACCGTTTTCGGTCGAGGCTGTCAGCGTAATCAGCGCGCAGAGTACCAGCCAGTGCGTTTGCCGGATTGGTCGCGCCCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACC‑TC‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑‑AAAG‑CACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGC‑AAGATATT‑ACCAA‑TGACG‑‑‑‑‑TTTTTTTTGCTACCGCG‑TCGG‑TTTGATGATGG‑AAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CC > 1:451287/1‑402 TGGGTACCGTTTTCGGTC‑AGGCTGTCAGCGTAATCAGCGCGCAGAGTACCAGCCAGTGCGTTTGCCGGATTGGTCGCGCCCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACC‑TCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑‑AAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACGT‑‑‑TTTTTTTTTGCTACCGCG‑TCGG‑TTTGATGATGG‑AAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑C > 1:451288/1‑386 GCGTTTGCCGGATTGGTCGCGCCCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATCAAAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑‑AAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑TTTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGGAAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CC > 1:451294/1‑333 GCCGGATTGGTCGCGCCCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCATCGTCGTTCAGCAT‑‑‑AAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCGCCGCAAAGATATTAACCAA‑TGACG‑‑‑‑‑TTTTTTTTGCTACCGCGTTCGG‑TTTGATGATTGGAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTCTTGTTG‑TTGTCTGTA‑CCAGCGTTACGTAGATGGCGCGGATTAT‑A‑TGAGCAACAGGGCCGTTG > 1:451296/1‑374 GCGCCCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑TTTT < 1:1311663/226‑1 CGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCA‑CGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑TTTTTT < 1:1311670/214‑1 CACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑TTTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGGAAAAAGTACGTTTCAATAGCCATTTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑C > 1:1311675/1‑279 GGTCATGAATTCAACCAGACCATCAAAAGAACGG‑TTTTCCATCGT‑GTTCAGCATA‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACGTTTTTTTTTTTTTGCTACCGCGTTCGG‑TTTGATGA‑GG‑AAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGAT > 1:451298/1‑269 CATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCATTTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACGT‑‑‑TTTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGG‑AAAAGTACG‑TTCAATAGCCATTTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGATTAT‑A‑TGAGCAACAGGGCCGTTGACTATTGATGAAGGTAACATTTTT > 1:1311677/1‑310 caAAAGAACGG‑TTTTCCATCGT‑GTTCAGCATAAAAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACGTTT‑TTTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGG‑AAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTGTTTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCG > 1:451300/3‑245 C‑AAAGAACGGTTTTTCCATCGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑‑TTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGGAAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGAT > 1:1311679/1‑242 C‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAA‑TTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAACTGACG‑‑‑‑TTTTTTTGT‑CTACCGCG‑TCGG‑TTTGATGATGG‑AAAAGTACG‑TTCAATAGCCATTTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCG > 1:451301/1‑237 TTCAGCATA‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑‑TTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGG‑AAAAGTACG‑TTCAATAGCCATTTTTTACCTCTGTAAATTGTTC‑Tttgattgg > 1:451303/1‑184 AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑TTTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGGGAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGATTATAA‑TGAGCAACAGGGCCGTTGACTATTGATGAAGGTAACATTTTTTTTAAAAAAAATaa > 1:451304/1‑271 AAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑‑TTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGGAAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGATTATAA‑TGAGCAACAGGGCC > 1:1311684/1‑229 AACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑‑TTTTTTTTGCTACCGCGTTCGGTTTTGATGATGGAAAAAGTACGTTTCAATAGCCT‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTACCCAGCG‑TACG‑AGATGGCGCGGATTATAA‑TGAGCAAC > 1:1311687/1‑181 TTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑TTTTTTTT > 1:451308/1‑53 CAAAGATATT‑ACCAA‑TGACGT‑‑‑TTTTTTTTTTGCACCGCGTTCGG‑TTTGATGATGG‑AAAAGTACG‑TTCAATAGCCATTTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGATTATAATTGAGCAACAGG > 1:1311690/1‑152 TT‑ACCAA‑TGACG‑‑‑‑‑TTTTTTTTGCTACCGCGTTCGG‑TTTGATGATGGAAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGATTATAA‑TGAGCAACAGGGCCGTTGACTATTGATG > 1:451310/1‑158 ||||||| TCGCGAGCGGCAGATTCGACGGAATCAGAACCGTGGGTACCGTTTTCGGTC‑AGGCTGTCAGCGTAATCAGCGCGCAGAGTACCAGCCAGTGCGTTTGCCGGATTGGTCGCGCCCAGCAGATCGCGGTGACGCTGAACGGCGTTTTCACCTTCCAGCACGGAAACCACGATCGGGCCAGAGGTCATGAATTCAACCAGACCATC‑AAAGAACGG‑TTTTCCATCGT‑GTTCAGCAT‑‑AAAAGCCACGTGCCTGTTCAACGGTCAGGTGCAGCA‑TTTTGGTGCCAACAATTTTGAACCCTGCAGCTTCAAAGCG‑CGCAAAGATATT‑ACCAA‑TGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2644482‑2644811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTGCTACCGCGTTCGG‑TTTGATGATGGAAAAAGTACG‑TTCAATAGCCA‑TTTTTACCTCTGTAAATTGTTC‑TGTTG‑TTGTCTGTA‑CCAGCG‑TACG‑AGATGGCGCGGATTATAA‑TGAGCAACAGGGCCGTTGACTATTGATGAAGGTAACATTTTTTTAAAATAAAATGA > NC_000913/2644812‑2644983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |