New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3828502	32 (0.540)	20 (0.330) +TTTT	13/366	2.6	38.2%	coding (164/1206 nt)	gltS	glutamate:sodium symporter
	?	NC_000913	3828503 =	33 (0.530)					coding (163/1206 nt)	gltS	glutamate:sodium symporter

CGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGAACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCATTTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3828092‑3828502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGC  >  NC_000913/3828503‑3828725                                                                                                                                                                                                                                                                                                                                                                                                                                 ||||||                                                                                                                                                                                                                                CGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGAACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCATTTTGCATCACCAACAGA‑CAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTTTTTcag                                                                                                                                                                                                                        <  1:593891/423‑4                                                CCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGAACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCATTTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGC‑AACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTca                                                                                                                                                                                                                              >  1:593903/1‑368                                                                                                                                  TGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGAACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCA‑TTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTT                                                                                                                                                                                                                              <  1:1502315/288‑1                                                                                                                                                   GCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGAACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCATTTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGC‑AACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATT‑ACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTcag                                                                                                                                                                                                                            >  1:593914/1‑269                                                                                                                                                                              AGAGTAATAGAACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAACAAAGCTAGCCATACCAATGCCAATGGCATTTTGCATCACCAACAGACCAACAAACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTTT                                                                                                                                                                                                                             <  1:593916/248‑1                                                                                                                                                                                        AACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCATTTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTT                                                                                                                                                                                                                              <  1:1502322/235‑1                                                                                                                                                                                        AACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCA‑TTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTT                                                                                                                                                                                                                              <  1:1502321/234‑1                                                                                                                                                                                                                                                     TGGCATTTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAGAATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCGTTTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAGCCCCATGC‑‑TTTTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCA‑CCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCG‑TGCGGCAACAAGCGTg                                                                                     >  1:1502332/1‑311                                                                                                                                                                                                                                                      GGCATTTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑‑TTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCACCgc                                                                                                                                                                                    >  1:1502333/1‑211                                                                                                                                                                                                                                                                             CAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCA‑CCGCAACAGG                                                                                                                                                                             >  1:1502337/1‑198                                                                                                                                                                                                                                                                                C‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTT                                                                                                                                                                                                                               <  1:1502334/147‑1                                                                                                                                                                                                                                                                                           CAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑TTTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCA‑CCGCAACAGGTTCCGGTATGGTGTATTT                                                                                                                                                           >  1:1502338/1‑202                                                                                                                                                                                                                                                                                                            ACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑‑TTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCA‑CCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTC                                                                                                          >  1:1502339/1‑234                                                                                                                                                                                                                                                                                                                     CCGGCACGC‑AACTGGCAATGTTGGCGTTTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGCT‑TTTTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCACCCGCAACAGGT                                                                                                                                                                            >  1:593930/1‑163                                                                                                                                                                                                                                                                                                                             CAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑‑TTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCA‑CCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTA                                                                            >  1:1502340/1‑247                                                                                                                                                                                                                                                                                                                                 CTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑TTTTTTTTTTTCAGTACTAG‑AGCGCCAGCGCCACCAACAAACCA‑CCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGG                                                                                                                                     >  1:1502342/1‑188                                                                                                                                                                                                                                                                                                                                                            GGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑‑TTTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTAC                                                        >  1:1502350/1‑239                                                                                                                                                                                                                                                                                                                                                             GTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGCTTTTTTTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTC‑TCATACTTCATCGCGCAGTGGC  >  1:1502351/1‑295                                                                                                                                                                                                                                                                                                                                                                                    CGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑‑TTTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATG                                                                                                                                                                   >  1:1502355/1‑108                                                                                                                                                                                                                                                                                                                                                                                                                     CCAG‑CCCATGC‑‑‑‑TTTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAG                                                                                                                                                                              >  1:1502363/1‑64                                                                                                                                                                                                                                                                                                                                                                                                                                 ||||||                                                                                                                                                                                                                                CGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGAACCGGCCAACAGCCCCATCAGCGGATCAAGCCCTAAC‑AAGCTAGCCATACCAATGCCAATGGCATTTTGCATCACCAACAGACCAAC‑AACCACAATCAAGAAG‑ATGCCAACCACACGCCCACCGGCACGCAAACTGGCAATGTTGGCG‑TTCAGGCCAATGGTGGCGAAGAAAGCCAGCATTAACGGATCGCGCAGGGACATATCAAAGTTGACTTCCCAG‑CCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3828092‑3828502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGC  >  NC_000913/3828503‑3828725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.