New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 688330	0 (0.000)	15 (0.240)	15/388	2.5	100%	noncoding (716/1195 nt)	IS5	repeat region
	?	NC_000913	688334 =	NA (NA)					noncoding (712/1195 nt)	IS5	repeat region

GAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCG‑TTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCG‑AAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCCTTGTATCTGGCTTTCACGAAGCCGAACTGTCGCTTGATGATGCG‑AAATGGGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGAC‑AAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGA  >  NC_000913/687871‑688633                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                                gAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTTCTTCGCCATTTAAGGCGTTATCCCCAG‑TTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCG‑AAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCCTTGTATCTGGC‑TTCACGAAGCCGAACTGTCGCTTGATGATGCG‑AAATGGGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCCGGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGG‑CAGCTCCTCGCGCTGTGGCG‑CCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctc                                                                                                                                                                                                                                                                                                         >  1:78221‑M1/1‑459 (MQ=255)                                                                                                                               tttAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCCTTGTATCTGGCTTTCACGAAGCCGAACTGTCGCTTGATGATGCG‑AAATGGGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCG‑CCCTTGGTAGCCGGCATCGGCTGAGAC‑Atgctcctctccatgcagcagattaccccagctgattgaggtcatgctcgttggccgcggtggtgaccagg                                                                                                                                                                                                                                           >  1:90197‑M1/1‑335 (MQ=255)                                                                                                                                                                                                                  aTCGTTTTTCAGCAACCCCTTGTATCTGGCTTTCACGAAGCCGAACTGTCGCTTGATGATGCG‑AAATGGGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCACGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctcc                                                                                                                                                                                                                                                                                                      >  1:156112‑M1/1‑254 (MQ=255)                                                                                                                                                                                                                                                    aCGAAGCCGAACTGTCGCTTGATG‑TGCG‑AAATGGGTGCTCCACCCTGGCCCGGATGCTGGC‑TTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTTCAAGGTTCTTACCTTGCC‑‑GGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGAC‑Attgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtgggtcaggccactcttgcatcgacaccatgtgggcctcatgccaagtgccactgatttgcctt                                                                                                                                                                        >  1:575511‑M1/1‑217 (MQ=255)                                                                                                                                                                                                                                                                   cGCTTGATGATGCGAAAATGGGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtgggtcaggccactcttggcatcgacaccaatgtgggcctcatgccaaagtgccactgattgcctttcttggtctgatgcatctccggatcgcgttgctgctctttgt                                                                                                                             >  1:29542‑M1/1‑206 (MQ=255)                                                                                                                                                                                                                                                                                                     gCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGG‑CAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGAC‑Attcgctcctctccat                                                                                                                                                                                                                                                                                                  >  1:413538‑M1/1‑170 (MQ=255)                                                                                                                                                                                                                                                                                                                                 tGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtgggtcaggccactcttggcatcgacaccaatgt                                                                                                                                                                                                       >  1:575517‑M1/1‑144 (MQ=255)                                                                                                                                                                                                                                                                                                                                      aTGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGG‑CAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctgcccatgccagagattacccag                                                                                                                                                                                                                                                                                  >  1:90214‑M1/1‑138 (MQ=255)                                                                                                                                                                                                                                                                                                                                               ttGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGG‑CAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtgggtcaggccactcttggcatcgacaccaatgtgggccttcatgccaaagtgccactgattgcctttctt                                                                                                                                                                  >  1:413544‑M1/1‑129 (MQ=255)                                                                                                                                                                                                                                                                                                                                                    cTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtggggtca                                                                                                                                                                                                                                 >  1:413546‑M1/1‑125 (MQ=255)                                                                                                                                                                                                                                                                                                                                                                     ttCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgcgtcctctccagtgcagcagattcccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtgggtcaggccactcttggcatcgacaccaatgtgggcctcatgccaaagtgccactgattgccttttcttggtctgatgcatctccggatcgcgttgctgctcttttgttcttggtcgagctgggtgcctcaatgtggtggcatcgaccaggtgcttgagtcatcatgacgctgcttcggccagccagcgattgatggtcttgaacattggcggccagttgatgctgct  >  1:544744‑M1/1‑109 (MQ=255)                                                                                                                                                                                                                                                                                                                                                                                      gCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGG‑CAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGAC‑Atgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggc                                                                                                                                                                                                                                           >  1:90221‑M1/1‑90 (MQ=255)                                                                                                                                                                                                                                                                                                                                                                                                                        cACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgctgggtggtgaccagggctgtgggtcaggccac                                                                                                                                                                                                                         >  1:544751‑M1/1‑59 (MQ=255)                                                                                                                                                                                                                                                                                                                                                                                                                                          gcgcTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGAC‑Atgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtgggtcaggccactcttgcatcgacaccatgtggcctcatgccaagtg                                                                                                                                                                                         >  1:167139‑M1/1‑40 (MQ=255)                                                                                                                                                                                                                                                                                                                                                                                                                                                  gcgcCCCTTGGTAGCCGGCATCGGCTGAGACAAtgctcctctccatgcagcagattacccagctgattgaggtcatgctcgttggccgcggtggtgaccaggctgtgggtcaggccactcttggcatcgacaccaatgtg                                                                                                                                                                                                      >  1:392934‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                                GAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCG‑TTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCG‑AAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCCTTGTATCTGGCTTTCACGAAGCCGAACTGTCGCTTGATGATGCG‑AAATGGGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTG‑TTTCAAGGTTCTTACCTTGCC‑GGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGAC‑AAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGA  >  NC_000913/687871‑688633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.