New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381671 =	NA (NA)	31 (0.510)	23/382	1.3	100%	noncoding (412/1331 nt)	IS2	repeat region
	?	NC_000913	1468827 =	0 (0.000)					noncoding (414/1331 nt)	IS2	repeat region

ACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCAT‑CCCCGGTTCAAAGCTCTGCTGAACAATTGCGATC‑TTTTCCTGTGTGGTACGCCGTCTG  >  NC_000913/1468620‑1469120                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                                  gataaccatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑t                                                                                                                                                                                                                                  >  1:1228171‑M2/208‑285 (MQ=255)                    ctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑tt                                                                                                                                                                                                                                                                       >  1:1382804‑M2/189‑232 (MQ=255)                                                              atcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑Gaa‑caa                                                                                                                                                                               >  1:1382813‑M2/147‑271 (MQ=255)                                                                                       catccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTAtt                                                                                                                                 >  1:1228184‑M2/122‑290 (MQ=255)                                                                                        catccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑Gaa‑caa                                                                                                                                                                               >  1:1228185‑M2/121‑245 (MQ=255)                                                                                                  atcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGAca                                                                                                                                                          >  1:1228188‑M2/111‑254 (MQ=255)                                                                                                                           aactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCt                                                                                                                                                                            >  1:1410773‑M2/86‑213 (MQ=255)                                                                                                                               gcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGActtccttc                                                                                                                                         >  1:784527‑M2/82‑242 (MQ=255)                                                                                                                                     cggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttttttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAAcctg‑ttctccggcgtaagcaata                                                                                                                                                       >  1:1410778‑M2/76‑214 (MQ=255)                                                                                                                                       gacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGgcag                                                                                                                                                                                                       >  1:1597825‑M2/74‑177 (MQ=255)                                                                                                                                           ccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTc‑tttt                                                                                                                                                                                                                           >  1:1228195‑M2/70‑153 (MQ=255)                                                                                                                                            cggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGActtccttc                                                                                                                                         >  1:1382824‑M2/69‑230 (MQ=255)                                                                                                                                             cggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGActtccttc                                                                                                                                         >  1:1597815‑M2/68‑228 (MQ=255)                                                                                                                                                  caacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttttt                                                                                                                                                                                                                                                                                                                 >  1:784558‑M2/63‑65 (MQ=255)                                                                                                                                                   aacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCGTTTTTCTTTGCCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGActtccttc                                                                                                                                         >  1:1228196‑M2/62‑225 (MQ=255)                                                                                                                                                   aacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCcggc                                                                                                                                                                 >  1:1382825‑M2/62‑198 (MQ=255)                                                                                                                                                    acggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttttt                                                                                                                                                                                                                                                                                                                >  1:1410799‑M2/61‑64 (MQ=255)                                                                                                                                                     cggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCt                                                                                                                                                                                                                                        >  1:1597834‑M2/60‑132 (MQ=255)                                                                                                                                                       gctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCG‑CCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑Ga                                                                                                                                                                                    >  1:1597821‑M2/58‑176 (MQ=255)                                                                                                                                                       gctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCG‑CCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑Ga                                                                                                                                                                                    >  1:1410775‑M2/58‑176 (MQ=255)                                                                                                                                                               aagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGTCGAGCAGGCGCTGGAG‑TTCTTTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCggcggc                                                                                                                                                              >  1:1410770‑M2/50‑190 (MQ=255)                                                                                                                                                                     actccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGC‑GCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAg                                                                          >  1:1597800‑M2/44‑266 (MQ=255)                                                                                                                                                                                   ggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCa                                                                                                                                                                                                                                                                          >  1:784553‑M2/30‑71 (MQ=255)                                                                                                                                                                                      agggcgcgtgcgctatccacttttttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACg                                                                            >  1:1410755‑M2/27‑248 (MQ=255)                                                                                                                                                                                        aagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCggcggc                                                                                                                                                              >  1:945535‑M2/25‑164 (MQ=255)                                                                                                                                                                                                  tgcgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCAT‑CCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTTCCTGTGTGGTACGCCGTCt   >  1:945541‑M2/15‑308 (MQ=255)                                                                                                                                                                                                    cgctatccacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCT‑GTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCCGGTTCAAAGc                                               >  1:945543‑M2/13‑262 (MQ=255)                                                                                                                                                                                                         atccactTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCCGGTTCaa                                                  >  1:504947‑M2/8‑255 (MQ=255)                                                                                                                                                                                                          cactttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCAT‑CCCCGGTTCAAAGCTCTGCTGAACAATTGCGATC‑TTTTCCTGTGTGGTACGCCGTCTg  >  1:1597786‑M2/7‑300 (MQ=255)                                                                                                                                                                                                           cacttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCGAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTAc                                                                                                                           >  1:1410759‑M2/6‑180 (MQ=255)                                                                                                                                                                                                            cactTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCCTGGC‑‑‑‑GC‑AG‑TTCA‑A‑GCAGCGAATCAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCAT‑CCCCGGTTCAAAGCTCTGCTGAACAATTGCGATC‑TTTTCCTGTGTGGTAc          >  1:1410745‑M2/5‑285 (MQ=255)                                                                                                                                                                                                              ttTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCGTTTTTC‑TTGCCGAGCAGGCGCTGGAGTTTCTTTTAATCTGCTTTCATGGCGGCAGCAAGTTTCAGAGGCAG‑GAA‑CAACCTGTTTCTCCGGCGGCG‑CAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCaga                                                                                                                     >  1:1382833‑M2/3‑188 (MQ=255)                                                                                                                                                                                                                TTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTc                                                                                                                                                                                               <  1:1410786‑M2/110‑1 (MQ=255)                                                                                                                                                                                                                TTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCAT‑CCCCGGTTCAAAGCTCTGCTGAACAATTGCGATC‑TTTTCCTGTGTgg             >  1:1410746‑M2/1‑283 (MQ=255)                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                                  ACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAGCAGGCGCTGGAG‑TTC‑TTTAATCTGC‑TTCATGGCGGCAGCAAG‑TTCAGAGGCAG‑GAA‑CAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAACGAGGGAGACCGTCAT‑CCCCGGTTCAAAGCTCTGCTGAACAATTGCGATC‑TTTTCCTGTGTGGTACGCCGTCTG  >  NC_000913/1468620‑1469120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.