Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 283373 | 284430 | 1058 | 13 [11] | [12] 13 | yagF | CP4‑6 prophage; D‑xylonate dehydratase |
ACGAGCCGCGCAAGGCGCAGCTGAAAACCCTGCTGCAACAGCTCAAGCTTTGCTGAGCCGGACGATAACGATGA‑CCATTGAGAAAATTTTCACCCCGCAGGACGACGCG‑TTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGGAGACGGACGCCCAATCGCGCT‑GGGCTACCACACCGGGCATTGGGAGATCGGCATGCAGATGCAGGCGGCGGCGAAGGAGATCACCCGCAATGGCGGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGG > NC_000913/283131‑283563 | aCGAGCCGCGCAAGGCGCAGCTGAAAACCCTGCTGCAACAGCTCAAGCTTTGCTGAGCCGGACGATAACGATGA‑CCATTGAGAAAATTTTCACCCCGCAGGACGACGCG‑TTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCgg > 1:746543/1‑273 (MQ=255) cccTGCTGCAACAGCTCAAGC‑TTGCTGAGCCGGACGATAACGATGACCCATTGAGAAAATTTTCACCCCGCAGGACGACGCG‑TTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGggcgg < 1:746546/258‑1 (MQ=255) gCTGAGCCGGACGATAACGATGA‑CCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTTATGCGGTGATCACCCACGCCGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCcaaca > 1:746549/1‑193 (MQ=255) gCTGAGCCGGACGATAACGATGA‑CCATTGAGAAAATTTTCACCCCGCAGGACGACGCG‑TTTTATGCGGTGATCACCCACG‑C‑GCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCcaaca > 1:746548/1‑190 (MQ=255) gagaAAATTTTCACCCCGCAGGACGACGCGTTTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTg > 1:746552/1‑184 (MQ=255) aaaaTTTTCACCCCGCAGGACGACGCG‑TTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGgaga > 1:746554/1‑218 (MQ=255) atttCACCCCGCAGGACGACGCG‑TTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCAGGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGga < 1:746550/212‑1 (MQ=255) cgcg‑TTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGGAGACGGACGCCCAATCGCGCT‑GGGCTACCACACCGGGc < 1:746553/232‑1 (MQ=255) gATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGGAgacgg > 1:746557/1‑183 (MQ=255) tGCTGATGGAATCTCCCCAGCGGCAACCTGTTCGGCATGACGCAG‑ACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGGAGACGGACGCCCAATCGCGCTGGGGCTACCACACCGGGCATTGGGAGATCGGCATGCAGATGCAGGCGGCGGCGAAGGAGATCACCCGCAATGGCGGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACggg < 1:30506/264‑1 (MQ=255) cTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAg < 1:30508/84‑1 (MQ=255) cGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGGAGACGGACGCCCAATCGCGCT‑GGGCTACCACACCGGGCATTGGGAGATCGGCATGCAGATGCAGGCGGCGGCGAAGGAGATCACCCGCAATGGCGGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGc < 1:746558/218‑1 (MQ=255) aacaaGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGGAgacg < 1:30509/64‑1 (MQ=255) | ACGAGCCGCGCAAGGCGCAGCTGAAAACCCTGCTGCAACAGCTCAAGCTTTGCTGAGCCGGACGATAACGATGA‑CCATTGAGAAAATTTTCACCCCGCAGGACGACGCG‑TTTTATGCGGTGATCACCCACG‑CGGCGGGGCCGCA‑GGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCT‑CCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAT‑GGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCGGCATCCGCGCCGGAGACGGACGCCCAATCGCGCT‑GGGCTACCACACCGGGCATTGGGAGATCGGCATGCAGATGCAGGCGGCGGCGAAGGAGATCACCCGCAATGGCGGGATCCCGTTCGCGGCCTTCGTCAGCGATCCGTGCGACGGG > NC_000913/283131‑283563 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |