| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,903 | Δ15,600 bp | IS1‑mediated | [flhE]–flhD | 15 genes [flhE], flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962903 | 1979165–1978505 | 15603–16263 | 126 [0] | [12] 14 | [flhE]–[insA‑5] | [flhE],flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,[insA‑5] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962902 | 0 (0.000) | 126 (2.030) | 93/388 | 0.0 | 100% | coding (71/393 nt) | flhE | flagellar protein |
| ? | NC_000913 | = 3584195 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
ACGCCATTCATGGCCA‑TATCAATGATTTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGC‑TGATGTCCGGC‑GGTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACG‑‑CTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAAT > NC_000913/1979025‑1979408 | aCGCCATTCATGGCCAGTATCAA‑GA‑TTTCTGGTGCGTACCGGGGTTGAGAAGCGGTG‑AAGTGAACTGCAG‑TGCCATG‑TTTACGGCAGTGAGAGCAGAGATAGCGCGTGATGTCCGGC‑GGTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATACTTTTGTTTTGGGTGTATTTCa < 1:378411/285‑1 (MQ=14) gCCATTCATGGCCA‑TATCAATGATTTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGC‑TGATGTCCGGC‑GGTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGta < 1:1214096/254‑1 (MQ=33) cAATGA‑TTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGC‑TGATGTCCGGC‑‑GTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGt > 1:1214110/1‑240 (MQ=255) gTACC‑GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGC‑TGATGTCCGGC‑GGTGC‑‑TTTTG‑CCGTTACGCA‑CA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaaaagttt < 1:1214106/268‑7 (MQ=255) cAGAGATAGCGC‑TGATGTCCGGC‑GGTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGATAAGAAACAGAAGCACCTCAGAGCA‑CCTCA‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATg < 1:378439/161‑1 (MQ=11) c‑TGATGTCCGGC‑GGTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATACttttgtt < 1:378487/166‑1 (MQ=255) ggATGTCCGGCGGGTGCTTTTTTGCCCGTTACGCACCACCCCCCGTCAGTAGCTGAAACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTCA‑‑AAAAACACCATCATACACTAAAATCAGT‑‑AAGTTGGCA‑GCATCAcccc < 1:378791/148‑2 (MQ=11) gATGTCCGGC‑‑GTGCT‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATAC‑TTTGTTTTGGGTGTAtt > 1:1214200/1‑174 (MQ=255) gTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTCAATAC‑TTTGTTTTGGgtgt > 1:1214449/1‑161 (MQ=255) c‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATAC‑TTTGTTTTGGGTGTATTTCAATCTGTTAAAAAG‑TTTTCGCTACGT‑CTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat > 1:1214453/1‑260 (MQ=255) gTTACGCACCAC‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAG‑AGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCAt < 1:378580/118‑1 (MQ=255) cca‑‑ccCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCACCCTCAAAAAAAACACCATCATACACT‑AAATCAGTTAAAGTTGGCAGGCATCAcccga > 1:378808/1‑115 (MQ=11) a‑‑ccCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACG‑‑CTAGCAAGCAAAAATGa < 1:1214447/188‑1 (MQ=255) a‑‑ccCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATAC‑TTTGTTT‑‑GGTGTATTTCAATCTGTT‑AAAAGTTTTTCGCTACGTACTAGCAAGCaaaatg > 1:1214472/1‑182 (MQ=18) | ACGCCATTCATGGCCA‑TATCAATGATTTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGC‑TGATGTCCGGC‑GGTGC‑‑TTTTG‑CCGTTACGCACCA‑‑CCCCGTCAGTAGCTG‑AACAGGAGGGACAGCTGAT‑AGAAACAGAAGCCACT‑GGAGCA‑CCTC‑‑‑AAAAACACCATCATACACT‑AAATCAGT‑‑AAGTTGGCA‑GCATCACCCATAAATGTATAAGTC‑ATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACG‑‑CTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAAT > NC_000913/1979025‑1979408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |