Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913618,0840T.61.1% ‑1.8 / 10.1 18intergenic (+46/‑170)entF/fepEapo‑serine activating enzyme/polysaccharide co‑polymerase family protein FepE
Reads supporting (aligned to +/- strand):  ref base T (6/1);  new base . (3/8);  total (9/9)
Fisher's exact test for biased strand distribution p-value = 4.98e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-02
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

ACGCTGATGCTGTGCGCCTGCTGACGACTGCTCATAGCGTACCGTTTGACGGTAAAGCGACGCTGTTTGTTGCTGAACGCACACTTCAGGAAGGTATGAGTCCCGAACGCGCCTGGTCGCCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTTATACCCCATGTCATCACTGAATATTAAACAGGGAAGTGACGCTCATTTTCCCGATTATCCTCTGGCGT  >  NC_000913/617806‑618314
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                             
aCGCTGATGCTGTGCGCCTGCTGACGACTGCTCATAGCGTACCGTTTGACGGTAAAGCGACGCTGTTTGTTGCTGAACGCACACTTCAGGAAGGTATGAGTCCCGAACGCGCCTGGTCGCCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGt                                                                                                                                                                                                                                               >  1:818187/1‑280 (MQ=255)
                    ctgACGACTGCTCATAGCGTACCGTTTGACGGTAAAGCGACGCTGTTTGTTGCTGAACGCACACTTCAGGAAGGTATGAGTCCCGAACGCGCCTGGTCGCCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCATAATTACAGAAAATAATTATGGGt                                                                                                                                                                                                                                               >  1:818190/1‑259 (MQ=255)
                                                                                    ttCAGGAAGGTATGAGTCCCGAACGCGCCTGGTCGCCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCATAATTACAGAAAATAATTATGGGttttt                                                                                                                                                                                                                                           >  1:818195/1‑199 (MQ=255)
                                                                                              tATGAGTCCCGACGCGCCTGGTCGCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGCGTTTGAAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACa                                                                                                                                                       <  1:818193/262‑1 (MQ=255)
                                                                                                   gTCCCGACGCGCCTGGTCGCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGTTTTTATTTGTTTGATTTATAGGTTTGATGaa                                                                                                                                                                                                          <  1:818194/209‑1 (MQ=255)
                                                                                                             cgcCTGGTCGCCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAAACTTCAGCTTCgg                                                                                                                                         <  1:818196/266‑1 (MQ=255)
                                                                                                                                          atatCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCa                                                                                                                                                                            <  1:818198/200‑1 (MQ=255)
                                                                                                                                                          ttGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAAGAAAATAATTATGGTTTTTATTTGTTTGATTTATAGGTTTGATGaa                                                                                                                                                                                                          <  1:818199/156‑1 (MQ=255)
                                                                                                                                                                            tatCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCATAATTACAGAAAATAATTATGGGTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTTATACCCCa                                                              >  1:818203/1‑275 (MQ=255)
                                                                                                                                                                             atCTCTCCAGGGACGTTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACGGTAAATTAAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTTATACCCCATGTCATCACTGAATATTAAACAGGGAAGTGACGCTCATTTTCCCGATTATCctct       >  1:82730/1‑333 (MQ=255)
                                                                                                                                                                                              ttgaaaaaaaTTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTta                                                                     >  1:818204/5‑253 (MQ=255)
                                                                                                                                                                                                                      cgcgCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGTATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTTATACCCCATGTCATCACTGAATATTAAACAGGGAAGTGACGCTCATTTTc                    >  1:818206/1‑280 (MQ=255)
                                                                                                                                                                                                                         gcAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAATAATTATGGTTTTTATTTGTTTGATTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTgg                                                                                                      <  1:818205/190‑1 (MQ=255)
                                                                                                                                                                                                                                         aaaTTAATATTATTTATAAAACCCATAATTACAGAAAATAATTATGGGTTTTTATTTGTTTTGATTTTATTAGGTTTGATGAATATTTCTCTTAAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCTACTTGGACTCATTTTCAGGTTATACCCCATGTCATCACTGAATATTAAACAGGGAAGTGACGCTCATTTTCCCGATTATCCTCTGGCGt  >  1:82735/1‑282 (MQ=255)
                                                                                                                                                                                                                                         aaaTTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGTTTTATTGTTTTGTATTTATTAGTTGTATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCAtttt                                                                            >  1:82736/1‑202 (MQ=255)
                                                                                                                                                                                                                                                   ttatttatAACCCATAATTACAAGAAATTAAGTATTGGTTTTTATTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTTATACCCCATGTCATCACTGAATATTAAACAGGGAAGt                                 <  1:82734/236‑1 (MQ=255)
                                                                                                                                                                                                                                                     atttatAAACCCATAAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTTGATTTATAGGttttga                                                                                                                                                                                                             >  1:82737/1‑65 (MQ=255)
                                                                                                                                                                                                                                                            aaaCCCATAATTACAGAAAATAATTATGGTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTccccc                                                                                           <  1:818207/170‑1 (MQ=255)
                                                                                                                                                                                                                                                              aCCCATAATTACAAGAAAATAATTATGGTTTTTTATTTTGTTTGATTTATAGGTTTGATGAat                                                                                                                                                                                                         <  1:818208/63‑1 (MQ=255)
                                                                                                                                                                                                                                                                      aTTACAGAAAATAATTATGGGTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTTATACCCCAt                                                             >  1:818209/1‑192 (MQ=255)
                                                                                                                                                                                                                                                                                       aTGGGTTTTTTTATTTTGTTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGt                                                                                                                      >  1:818211/1‑123 (MQ=255)
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                             
ACGCTGATGCTGTGCGCCTGCTGACGACTGCTCATAGCGTACCGTTTGACGGTAAAGCGACGCTGTTTGTTGCTGAACGCACACTTCAGGAAGGTATGAGTCCCGAACGCGCCTGGTCGCCGTGGATAGCGGAGCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACTCATTTTCAGGTTATACCCCATGTCATCACTGAATATTAAACAGGGAAGTGACGCTCATTTTCCCGATTATCCTCTGGCGT  >  NC_000913/617806‑618314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: