Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913925,5680C.61.1% ‑3.0 / 11.4 18intergenic (+28/+316)clpA/serWATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (6/1);  new base . (11/0);  total (17/1)
Fisher's exact test for biased strand distribution p-value = 3.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.73e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

TGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAA‑‑TTCACAGGTAACATAC  >  NC_000913/925294‑925796
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  
tgtTTCTCTGGAAGTGAGCCAGGAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAAt                                                                                                                                                                                                                                              >  1:861118/1‑278 (MQ=255)
    tctcTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTcgtaa                                                                                                                                                                                                                                                >  1:861119/1‑271 (MQ=255)
                                                     aCGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTc                                                                                                                                                                                                                                                    >  1:861123/1‑220 (MQ=255)
                                                                      gcTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTACGAAAGGAGGTTATCGGACttttttttgtt                                                                                                                                                                                                          <  1:114594/243‑4 (MQ=255)
                                                                                          tCATCCAGGACACCTGAAAAAACCGCTCGCCAACGACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAGAGAAAAATTGAGCTGACTTACGGATTCCAGAGTGCAC‑‑AAGCACAAGGCGGAAGCAGCGCATTTATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTTGTTTATgg                                                                                                                                                                                                        >  1:114596/1‑221 (MQ=255)
                                                                                                                              aaCTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACTTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGAT‑‑AAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAA‑‑TTCACAgg          >  1:114597/1‑368 (MQ=255)
                                                                                                                                        tGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACTTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAg                                                                                                                                            >  1:861130/1‑235 (MQ=255)
                                                                                                                                        tGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTTGGAGGAGGTTCAGACCTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAGGGTGCTGCAGga                                                                                                     >  1:861129/1‑270 (MQ=255)
                                                                                                                                                                          gcgcTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGGAGGAGGTTCAGTACCCTTTTTTTTAatgatgat                                                                                                                                                                >  1:861131/1‑182 (MQ=255)
                                                                                                                                                                                  tAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTcc                                                                                                                                                                                                                                                   >  1:114598/1‑100 (MQ=255)
                                                                                                                                                                                    aaGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGACGGTTACGGa                                                                                                                                                                                                                       >  1:114599/1‑121 (MQ=255)
                                                                                                                                                                                           aaaTGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACTTTTTTGTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAGGTAAGGATAAAAAGGGtgct                                                                                                           >  1:861133/1‑213 (MQ=255)
                                                                                                                                                                                           aaaTGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACTTTTTGtt                                                                                                                                                                                                             >  1:861132/1‑121 (MQ=255)
                                                                                                                                                                                                           cGGATTCCAGAGTGCACAAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAagag                                                                                                                                                                                                                                >  1:114601/1‑90 (MQ=255)
                                                                                                                                                                                                           cGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGttt                                                                                                                                                                                                            >  1:114602/1‑108 (MQ=255)
                                                                                                                                                                                                                  cAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACt                                                                                                                                                                                                                    >  1:861134/1‑92 (MQ=255)
                                                                                                                                                                                                                                aGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCGTAATCTCGAAAGAGGTTACGGACTTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATgg                                                                                               >  1:861135/1‑193 (MQ=255)
                                                                                                                                                                                                                                                       ttAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGaa                                                                                                                                                                                                                                      >  1:114603/1‑44 (MQ=255)
                                                                                                                                                                                                                                                         aaTCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAAtctc                                                                                                                                                                                                                                          >  1:114605/1‑39 (MQ=255)
                                                                                                                                                                                                                                                         aaTCTGATTGTTAGGTAGGTTGGTCAAGTCCTAATCTCGAAAGAGGTTACGGACTTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAAACGTGTAGTATTTTGAGTTCACTGCCGTACAGGCAGCTTAGAAAATTTCACAGGTAACATAc  >  1:114604/1‑261 (MQ=255)
                                                                                                                                                                                                                                                                         aggtTGGTCAAGTCCGTAATCTCGAAAAGAGGTTACGGACtt                                                                                                                                                                                                                   >  1:114606/1‑42 (MQ=255)
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  
TGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAA‑‑TTCACAGGTAACATAC  >  NC_000913/925294‑925796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: