Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,153,201	1	.	A	66.7%	86.2 / 11.4	36	intergenic (+21/‑99)	fabF/pabC	beta‑ketoacyl‑[acyl carrier protein] synthase II/aminodeoxychorismate lyase
Reads supporting (aligned to +/- strand):  ref base . (6/6);  new base A (24/0);  total (30/6)
Fisher's exact test for biased strand distribution p-value = 4.74e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AACCATCTTCGGTGAAGCTGCAAGCCGTGTGTTGGTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCA‑TCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAG‑TTTGTTATCGGCGCATATCCAGCGACTACAGGATGCTTGTCAGCGGTTGATGATTTCCTGTGACTTCTGGCCTCAGCTTGAACAAGAGATGAAAACGCTGGCAGCAGAACAGCAAAATGGTGT  >  NC_000913/1152898‑1153532                                                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                                                                                                        aaCCATCTTCGGTGAAGCTGCAAGCCGTGTGTTGGT‑AGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCA‑TCCTGGCGCCGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTTAAAAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATAAAAAAGGTCCGC‑TTGCGGGCCTTTTTTTTTT‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TT‑ACGGTCAt                                                                                                                                                                                                                            >  1:139754/1‑435 (MQ=255)                              tgtTGGTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCA‑TCCT‑GCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCGCCACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tt                                                                                                                                                                                                                                                                                                                                  >  1:894425/1‑298 (MQ=255)                                                    tATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCA‑TCCT‑GCGCTGCGCGATCAGGCTGTTCCGCC‑ACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCgg                                                                                                                                                                                                                                                                                                                                                      >  1:894429/1‑268 (MQ=255)                                                              cACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCA‑TCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCC‑GATGAAGGTTGCGATCTGGATTTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCCAACCC‑TTAT‑‑aaa                                                                                                                                                                                                                                                                                                                                                                     >  1:139760/1‑247 (MQ=255)                                                                      aGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCA‑TCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTc                                                                                                                                                                                                                                                                                                             >  1:894431/1‑278 (MQ=255)                                                                                    cAGTAGAATCTATCTACTCCA‑TCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTTAAAAAAAGATCT‑AAGTTG‑TTATTTTCC‑ACCC‑TTATAAAAAAGGTCCGC‑TTGCGGGcc                                                                                                                                                                                                                                                                                                                                                   >  1:139762/1‑245 (MQ=255)                                                                                              tatctaCTCCATTCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGGTTTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGGTTTCTTTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCCTTTATA‑AAAAGGTCCGc                                                                                                                                                                                                                                                                                                                                                             >  1:139763/1‑228 (MQ=255)                                                                                                tctaCTCCA‑TCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAA‑GG‑TTC‑TTTGATCTTTT‑‑AAAAAGATCT‑AAGTTG‑TCA‑TTTCC‑A‑CC‑TTAT‑‑AAAAGGTCCGC‑TTGC‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAATTTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAG‑TTTGTTATCGGCGCatat                                                                                                           <  1:139761/433‑1 (MQ=255)                                                                                                  taCTCCA‑TCCTGGCGCTGCGCG‑TCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTTA‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑Ttttttttttct                                                                                                                                                                                                                                                                                                                        >  1:139764/1‑237 (MQ=255)                                                                                                      ccA‑TCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tt                                                                                                                                                                                                                                                                                                                                  >  1:894434/1‑225 (MQ=255)                                                                                                            cTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTTA‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGCTTTGCGGGCCTTTTTTTT‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCttaa‑t                                                                                                                                                                                                                                      >  1:139765/1‑318 (MQ=255)                                                                                                                            aGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTGTTAACTCCTTCGGC‑TTCGGTGGCACTAATGGTTTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑Ttat                                                                                                                                                                                                                                                                                                                                                                          <  1:894435/184‑1 (MQ=255)                                                                                                                                   tCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑aaa                                                                                                                                                                                                                                                                                                                                                                     >  1:139766/1‑178 (MQ=255)                                                                                                                                             aTCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCA‑TTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑‑TTTA‑TT‑CGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGc                                                                                                                                                                                                           >  1:139767/1‑300 (MQ=255)                                                                                                                                             aTCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑‑AAAAGATCT‑AAGTTG‑TTCATTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGC‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCtt                                                                                                                                                                                                                                          <  1:894436/269‑1 (MQ=255)                                                                                                                                                aaCCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTc                                                                                                                                                                                                                                                                                                                             >  1:894438/1‑190 (MQ=255)                                                                                                                                                            ccGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCg                                                                                                                                                                                                                                                    >  1:894439/1‑247 (MQ=255)                                                                                                                                                                        tGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTAGGCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑Ttat                                                                                                                                                                                                                                                                                                                                                                          <  1:894437/139‑1 (MQ=255)                                                                                                                                                                        tGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTTTTT‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑tt                                                                                                                                                                                  >  1:894440/1‑304 (MQ=255)                                                                                                                                                                                               cACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTTTTTTTTTTTTTTTTTTTTTCTTAG‑C‑TTTTATTTCCGACTTGTTCCGTAGTTGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATaa                                                                                                                                                                                                                          >  1:139770/1‑256 (MQ=255)                                                                                                                                                                                                     gcgcGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑‑AAAAGATCT‑AAGTTG‑TCA‑TTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGC‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATa                                                                                                                                                                                                                                                            <  1:894441/194‑1 (MQ=255)                                                                                                                                                                                                       gcgTCAGGTTTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTTTTT‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAGTC‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAGTTTTGTTATCGGCGCa                                                                                                              >  1:139771/1‑341 (MQ=255)                                                                                                                                                                                                            aGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGCTTTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑‑AAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCatgtaa                                                                                                                                                                                                     >  1:894444/1‑241 (MQ=255)                                                                                                                                                                                                            aGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑‑AAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCTTAG‑C‑‑TTTA‑TTCCGACTTGTTc                                                                                                                                                                                                                                                                                                   >  1:139772/1‑149 (MQ=255)                                                                                                                                                                                                                 tA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAGTTTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTa                                                                                                                                     >  1:894446/1‑304 (MQ=255)                                                                                                                                                                                                                 tA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCaa                                                                                                                                                                                          >  1:894445/1‑254 (MQ=255)                                                                                                                                                                                                                            gaatACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTGTTCACTTTCC‑A‑CC‑TTAT‑‑AAAAGGTCCGC‑TTGC‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATc                                                                                                                                                                                                                 <  1:894443/218‑1 (MQ=255)                                                                                                                                                                                                                                      tgtg‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAG‑tt                                                                                                                           >  1:894448/1‑292 (MQ=255)                                                                                                                                                                                                                                         g‑tAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCA‑TTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑tt                                                                                                                                                                                                                                                                                                                                                          >  1:139774/1‑90 (MQ=255)                                                                                                                                                                                                                                                  ttcggc‑ttcggTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGC‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑CTTTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTgg                                                                                                                                                                                                            <  1:894447/204‑1 (MQ=255)                                                                                                                                                                                                                                                     ggc‑ttcggTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTTTTTTTT‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAG‑TTTGTTATCGGCGCATATCCAGCGACTACAGGATGCTTGTCAGCGGTTGATGATTTCCTGTGACTTCTGGCCTCAGCTTGAACAAGAGATGAAAACGCTGGCAGCAGAACAGCAAAATGgtgt  >  1:139776/1‑406 (MQ=255)                                                                                                                                                                                                                                                                  aCTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAG‑TTTGTTATCGGCGCATATCCAGCGACTACAGGATGCTTGTCAGCGGTtgat                                                                          >  1:894449/1‑314 (MQ=255)                                                                                                                                                                                                                                                                      aTGG‑TTCTTTTGATC‑TTTAAAAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGCTTTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttttt                                                                                                                                                                                                                                                                                                                              >  1:139777/1‑81 (MQ=255)                                                                                                                                                                                                                                                                         g‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTTT‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAAC‑GTCATAAGCA‑GAATCGCT‑GC‑GTAAGCGATCGGGCAACGCAG‑TTTg                                                                                                                                                                                >  1:894450/1‑209 (MQ=255)                                                                                                                                                                                                                                                                               tttGATC‑TTTA‑AAAAAGATCTAAAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTTTTT‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTGTTTTTA‑‑CCA‑CCGCCAGAGTTATCGAc                                                                                                                                         >  1:139778/1‑249 (MQ=255)                                                                                                                                                                                                                                                                                         ttaaaaaaGATCT‑AAGTTG‑TCTATTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGC‑GGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTCTTAG‑C‑ttt                                                                                                                                                                                                                                                                                                                   <  1:894451/66‑1 (MQ=255)                                                                                                                                                                                                                                                                                         t‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATtc                                                                                                                                                                                                                                                                   >  1:894452/1‑116 (MQ=255)                                                                                                                                                                                                                                                                                          taaaaaaGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTATA‑AAAAGGTCCGC‑TTg                                                                                                                                                                                                                                                                                                                                                         >  1:139779/3‑50 (MQ=255)                                                                                                                                                                                                                                                                                                       aaGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTATCCCACCCGCCAGAGTTATCGACGGTAAAGTc                                                                                                                                >  1:894453/1‑232 (MQ=255)                                                                                                                                                                                                                                                                                                                         ccc‑TTATA‑AAAAGGTCCGC‑TTGCGGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATC‑GGCAACGCAGTTTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAG‑TTTGtt                                                                                                                       >  1:894455/1‑224 (MQ=255)                                                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                                                                                                        AACCATCTTCGGTGAAGCTGCAAGCCGTGTGTTGGTAAGCTCCACGAAATCTATGACCGGTCACCTGTTAGGTGCGGCGGGTGCAGTAGAATCTATCTACTCCA‑TCCTGGCGCTGCGCGATCAGGCTGTTCCGCCAACCATCAACCTGGATAACCCGGATGAAGGTTGCGATCTGGA‑TTTCGTACCG‑CACGAAGCGCGTCAGG‑TTA‑GCGGAATGGAATACACTCTGTG‑TAACTCCTTCGGC‑TTCGGTGGCACTAATGG‑TTC‑TTTGATC‑TTT‑‑AAAAAGATCT‑AAGTTG‑TCATTTTCC‑ACCC‑TTAT‑‑AAAAGGTCCGC‑TTGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCTTAG‑C‑TTTTA‑TTCCGACTTGTTCCGTAG‑TGAACATGCTGCCACACTAACAATTCTCTGATAAGGAGCCGGTATGTTCTTAA‑TTAACGGTCATAAGCAGGAATCGCTGGCAGTAAGCGATCGGGCAACGCAG‑TTTGGTGATGGTTG‑TTTTA‑‑CCA‑CCGCCAGAGTTATCGACGGTAAAGTCAG‑TTTGTTATCGGCGCATATCCAGCGACTACAGGATGCTTGTCAGCGGTTGATGATTTCCTGTGACTTCTGGCCTCAGCTTGAACAAGAGATGAAAACGCTGGCAGCAGAACAGCAAAATGGTGT  >  NC_000913/1152898‑1153532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑