Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,660,9280T.64.1% 0.1 / 25.2 39coding (515/3114 nt)mdtFmultidrug efflux pump RND permease MdtF
Reads supporting (aligned to +/- strand):  ref base T (3/11);  new base . (25/0);  total (28/11)
Fisher's exact test for biased strand distribution p-value = 2.17e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.64e-03
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

AGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGA  >  NC_000913/3660657‑3661219
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                                     
aGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCGCACGGTTCAAGTGCAAAATAAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGTAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGAc                                                                                                                                                                                                                                                          >  1:576509/1‑324 (MQ=255)
                  gCCTCTATCACTCTGACCTCGAGACTGGGACATCTCCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTATTTCTGATAACGGCAGCCTCAACCAGTACGTATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCa                                                                                                                                                                                                                                                                            >  1:576513/1‑284 (MQ=255)
                                      cGAGACTGGGACATCTCCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGGTATAACTCTTTGGTTCCGAg                                                                                                                                                                                                                                                                                   >  1:576514/1‑264 (MQ=255)
                                      cGAGACTGGGACATCTCCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGt                                                                                                                                                                                                                                                                                  >  1:1478896/1‑262 (MQ=255)
                                                     tcCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGtgg                                                                                                                                                                                                                                                                                                                     >  1:1478898/1‑219 (MQ=255)
                                                                  caGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGAcc                                                                                                                                                                                                                                                         >  1:1478899/1‑259 (MQ=255)
                                                                         aaGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCggag                                                                                                                                                                                                                                                                                  >  1:1478900/1‑223 (MQ=255)
                                                                             tgcaaaTAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTATTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTACGCGTACAACTCTTTGGTTCCGAGTATGCCATGc                                                                                                                                                                                                                                                                        >  1:576517/4‑229 (MQ=255)
                                                                               aaaaTAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCg                                                                                                                                                                                                                                                                       >  1:576518/1‑233 (MQ=255)
                                                                                    aaaaCTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATctgg                                                                                                                                                                                                                                                                >  1:576519/2‑235 (MQ=255)
                                                                                                cGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATTATCAAAAGAACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGa                                                                                                                                                                                                                                                           >  1:576522/1‑230 (MQ=255)
                                                                                                            aTTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATACCTGGTACCTTcc                                                                                                                                                                                                                 >  1:1478903/1‑251 (MQ=255)
                                                                                                               aCCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAAGACCCGCTAAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAAACTCAATAAATATaa                                                                                                                                                                                                                              <  1:576521/241‑1 (MQ=255)
                                                                                                                   gAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATctgg                                                                                                                                                                                                                                                                >  1:1478905/1‑201 (MQ=255)
                                                                                                                    aaGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCaaact                                                                                                                                                                                                                                                >  1:576528/1‑216 (MQ=255)
                                                                                                                            cagcagcagGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCg                                                                                                                                                                                                                >  1:1478906/1‑238 (MQ=255)
                                                                                                                            cagcagcagGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGc                                                                                                                                                                                                                                                                              >  1:1478907/1‑180 (MQ=255)
                                                                                                                                        aTTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATctggctgg                                                                                                                                                                                                                                                            <  1:576527/188‑1 (MQ=255)
                                                                                                                                                                 atatCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATg                                                                                                                                                                                                                                                                          >  1:576529/1‑148 (MQ=255)
                                                                                                                                                                 atatCCTGATGGTAGCGGCGTTTATTTCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGc                                                                                                                                                                                                                                                                              >  1:1478910/1‑143 (MQ=255)
                                                                                                                                                                       tGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTg                                                                                                                                                                                         >  1:1478912/1‑217 (MQ=255)
                                                                                                                                                                         aTGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATctggctgg                                                                                                                                                                                                                                                            >  1:1478913/1‑154 (MQ=255)
                                                                                                                                                                                 ggcgTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTcc                                                                                                                                                                                                                 <  1:1478909/184‑1 (MQ=255)
                                                                                                                                                                                            tCTGATAACGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTACGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACCTCAATAAATATTACCTgg                                                                                                                                                                                                                         >  1:1478915/1‑167 (MQ=255)
                                                                                                                                                                                               gATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTAACCGCGGGCGT‑‑GGTAGCGTTACAACTCTTTGGTTCCGAGTAt                                                                                                                                                                                                                                                                                >  1:576531/1‑115 (MQ=255)
                                                                                                                                                                                                aTAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCa                                                                                                                                                                              <  1:576530/206‑1 (MQ=255)
                                                                                                                                                                                                        aGCCTCGAACCAGTACGATATCGACGGACTACTGTAGCGTCTAATATCAAAGGACCCGCTAAGCCGTACCGCGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCa                                                                                      <  1:1478914/284‑1 (MQ=255)
                                                                                                                                                                                                                       cGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTGGCGAAAATCCTg                                                          >  1:1478917/1‑294 (MQ=255)
                                                                                                                                                                                                                       cGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTGGCGAAAATCCTGt                                                         >  1:1478918/1‑295 (MQ=255)
                                                                                                                                                                                                                          tatCGCGGACTTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTTTGGGTTAGCGTACAACTCTT‑‑GTTCCGAGTATGCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCa                                                                                      <  1:576532/264‑1 (MQ=255)
                                                                                                                                                                                                                          tatCGCGGACTACTGTAGCGTCTAATATCAAGACCCGCTAAGCCGTACCGCGGCGTT‑‑GGTAGCGTACAACTCTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATAATAACCTGGTACCTTCCGATGTATTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAATCCTGTTGAAAGTTCAGCAAGa                                         <  1:576533/305‑1 (MQ=255)
                                                                                                                                                                                                                                          gTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGc                                                                                                                                                                                                                                                                              <  1:1478916/77‑1 (MQ=255)
                                                                                                                                                                                                                                                    atatCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAACTCAATAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAACAACCAGATTTCCGGTGGTCAACTGGTGGCATGCCGACAGGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGATTTGGGCAAATCCTGTTGAAAg                                                   >  1:576535/1‑272 (MQ=255)
                                                                                                                                                                                                                                                       atCAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTcc                                                                                                                                                                                                     >  1:576536/1‑131 (MQ=255)
                                                                                                                                                                                                                                                        tCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACcagca                                                                                                                            >  1:1478919/1‑201 (MQ=255)
                                                                                                                                                                                                                                                        tCAAAGACCCGCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAACTCAATAAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGAtt                                                                                                                                                                                               >  1:576537/1‑136 (MQ=255)
                                                                                                                                                                                                                                                                     gCTAAGCCGTACCGCGGGCGT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTAcc                                                                                                                                                                                                                     >  1:1478923/1‑104 (MQ=255)
                                                                                                                                                                                                                                                                       tAAGCCGTACCGTCGGCGTT‑‑GGTAGCGTACAACTCTT‑‑GTTCCGAGTATGCCATGCGTATCTGGCTGGACCGCAAAACTCAATAAATTATAACCTGGTACCTTCCGATGTTATTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGa  <  1:576534/307‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        gCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAAACGCCTCGATCATTGTGCAGACGCGTCTGCaaaac                                                                                  <  1:1478920/216‑3 (MQ=255)
                                                                                                                                                                                                                                                                                          ttt‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAAACGCCGGAAGAATTTGGCaa                                                                 <  1:1478922/230‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          gTT‑‑GGTAGCCGTACAACTCTTTGGTTCCGAGTATGCCATGCCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTgg                                                                                                                                                          <  1:1478921/147‑1 (MQ=255)
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                                     
AGTGATGCGGCGGGCAATGCCTCTATCACTCTGACCTTCGAGACTGGGACATCTCCTGATATCGCACAGGTTCAAGTGCAAAATAAACTGCAACTCGCTATGCCTTCATTACCTGAAGCAGTGCAGCAGCAGGGGATTAGCGTCGATAAGTCGAGCAGTAATATCCTGATGGTAGCGGCGTTTATTTCTGATAACGGCAGCCTCAACCAGTACGATATCGCGGACTATGTAGCGTCTAATATCAAAGACCCGCTAAGCCGTACCGCGGGCGTT‑‑GGTAGCGTACAACTCTTTGGTTCCGAGTATGCCATGCGTATCTGGCTGGACCCGCAAAAACTCAATAAATATAACCTGGTACCTTCCGATGTTATTTCCCAGATTAAGGTGCAAAACAACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGA  >  NC_000913/3660657‑3661219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: