Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT66.7% 2.9 / 13.7 20intergenic (+266/+376)gltP/yjcOglutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
Reads supporting (aligned to +/- strand):  ref base C (2/4);  new base T (5/7);  total (8/12)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.07e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

ATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG  >  NC_000913/4295903‑4296142
                                                                                                                                                                        |                                                                                    
aTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCt                                                                      <  1:1569152/173‑1 (MQ=14)
          tCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGCATGCGACGCTTAACGCGTTCTTACTCAGGCCTACGGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGt                 <  1:1569155/218‑1 (MQ=11)
                                   ggACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCTAATAGCCTGATTTAGGCGTGATTTTGTAGGTCGATAAGGCGTTTACGCCGCATCCGACTCAATGCCTGATg                                                                              >  1:643940/2‑131 (MQ=11)
                                                tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt                                                           >  1:643955/1‑135 (MQ=255)
                                                gctaTGCGACGCTTTAACGCGTCTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTTAGCGTGATTTTGGTAGGTCCGGATAAGGCGTTTACGCCGCATCCGACTCAATGCCTGATGCGACGCTTTGCCGCGTCTTATccag                                                    >  1:1569180/4‑143 (MQ=11)
                                                   aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCTAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTTACGCCGCATCCGACATCAAGCCTGATGCGAc                                                                          >  1:643941/1‑121 (MQ=11)
                                                                         tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg                                                                    >  1:643956/1‑106 (MQ=255)
                                                                                 ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt                                                                     <  1:1569164/97‑1 (MQ=18)
                                                                                    aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGCGTTACAGCCGCATCGACATCAAGCCTGATGCGACGCTTGCCGCGTCTTa                                                         <  1:1569165/102‑1 (MQ=11)
                                                                                     cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc                                                                             <  1:643943/86‑1 (MQ=18)
                                                                                     cGCCAGACAGCGCAATAGCCTGATTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTGCCGCGTCTTATCAGGcc                                                  <  1:643948/109‑1 (MQ=255)
                                                                                          aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                                     <  1:643945/89‑1 (MQ=33)
                                                                                            aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                        <  1:1569166/99‑1 (MQ=255)
                                                                                              aGCGCAATAGCCTGATTTAGCGTGATTTGTAGGTCGTATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                               >  1:643949/1‑75 (MQ=11)
                                                                                                     aTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt                                                           <  1:643947/89‑1 (MQ=255)
                                                                                                           tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc                                                                             <  1:1569167/66‑1 (MQ=25)
                                                                                                            gATTTAGCGTGATTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc                                                                             <  1:1569168/64‑1 (MQ=14)
                                                                                                                       tGATTTTGTAGGTCGGATAAGGCGTTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTg                                                                    >  1:1569172/1‑65 (MQ=255)
                                                                                                                          ttttGTAGGTCGGATAAGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt                                            <  1:1569191/83‑5 (MQ=11)
                                                                                                                                                    tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTGATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCga  >  1:1569174/1‑103 (MQ=255)
                                                                                                                                                                        |                                                                                    
ATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG  >  NC_000913/4295903‑4296142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: