| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,728,708 | +T | noncoding (477/2904 nt) | rrlG ← | 23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,728,704 | 1 | . | T | 92.3% | 41.4 / ‑5.4 | 13 | noncoding (481/2904 nt) | rrlG | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (12/0); total (13/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATACCCTGCAACTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCC‑GGGGTTC‑‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTAC‑GGGGCTGTCACCCTGTATCGCGCGCC‑TTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCT‑CCCCGTTCGCTCGCCGCTACT‑GGGGGAATCTCGGTTG > NC_000913/2728462‑2728960 | tagtgttacccaaccttcaacctgcccatggctagatcaccgggtttcgggtctataccctgcaacttaacgcccagttaagactcggtttcccttcggctcccctattcggttaaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGa > 1:1043885‑M2/219‑291 (MQ=255) caccgggtttcgggtctataccctgcaacttaacgcccagtttaagactcggtttcccttcggctcccctattcggttaaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTACTTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCata‑t > 1:1152201‑M2/183‑288 (MQ=255) ccttcggctcccctattcggttaaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCCGGGGGTTC‑‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATACTTCAGACAGGATCACCACGTGTCCCGCCCTa > 1:787988‑M2/127‑262 (MQ=255) acagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttctttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTccc > 1:1076083‑M2/97‑195 (MQ=255) gaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccatctgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTccc > 1:1051037‑M2/94‑133 (MQ=255) cacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTACGGGGGCTGTCACCCTGTATCGCGCGCCTTTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCTCCCCCGTTCGCTCGCCGCTACTGGGGGGAATCTCGGTTg > 1:1181567‑M2/53‑339 (MQ=255) cccactgcttgtacgtacacggtttcaggttcttttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCa > 1:280744‑M2/37‑138 (MQ=255) ctgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTTTTGTGTAC‑GGGGCTGTCACCCTGTATCGCGCGCC‑TTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCT‑CCCCGTtcg > 1:1016908‑M2/31‑285 (MQ=255) gcttgtacgtacacggtttcaggtttcttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGgtc > 1:1032130‑M2/30‑95 (MQ=255) tgtacgtacacggtttcaggttctttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTACTTGGTTCACTATCGGTCAGTCAGGa > 1:977788‑M2/27‑101 (MQ=255) cacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTAC‑GGGGCTGTCACCCTGTa > 1:1006557‑M2/18‑205 (MQ=255) ttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑tt > 1:1168589‑M2/12‑171 (MQ=255) tcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGT‑CCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGcc > 1:1077661‑M2/11‑140 (MQ=255) | GTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATACCCTGCAACTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCC‑GGGGTTC‑‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTAC‑GGGGCTGTCACCCTGTATCGCGCGCC‑TTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCT‑CCCCGTTCGCTCGCCGCTACT‑GGGGGAATCTCGGTTG > NC_000913/2728462‑2728960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |