Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	283488	284399	912	17 [14]	[15] 16	yagF	CP4‑6 prophage; D‑xylonate dehydratase

CGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGTAAAGTGCCGCGTCTGGTGAGCGTGCTGCCCAACGGCCCGGACTATCACCCGACCGTGCGCGCCTTCCTCGCGGGCGGCGTGCCGGA‑GGTGATGC‑TCCACCTGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑GGTGATCAAGGCCACGGCGATCGA‑CCCGTCGGTGGTGGGCGAAGAT‑GGCGTATACCACCACACCGGCCGGG  >  NC_000913/284165‑284617                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                    cggcggGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGT‑AAGTGCCGCGTCTGGTGAGCGTGCTGCCCAACGGCCCGGACTATCACCCGA‑CGTGCGCGCCTTCCTCGCGGGCGGCGTGCCGGA‑GGTGATGC‑TCCACCTGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAg                                                                                                                                                                                           <  1:19342/273‑1 (MQ=255)                                                                                                       ccGTGCGCGCCTT‑CTCGCGGGC‑GCGTGCCGGACGGTGATGCGTCCACCTGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCAGTGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTTCCCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑gg                                                                         <  1:374702/284‑1 (MQ=255)                                                                                                          tGCGCGCCTTCCTCGCGGGCGGCGTGCCGGA‑GGTGATGC‑TCCACCTGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTgccgc                                                                                                                                                         <  1:19343/204‑1 (MQ=255)                                                                                                                     cTCGCGGGCGGCGTGCCGGA‑GGTGATGC‑TCCACCTGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAg                                                                                                                                                                                              <  1:19344/156‑1 (MQ=255)                                                                                                                        gcgggcggCGTGCCGGA‑GGTGATGC‑TCCACCTGCGCGACCTCGGCCTGCCTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAACCCTTGAATGGTGG‑CAGGCGTCCGAgcg                                                                                                                                                                                                                                >  1:1221711/1‑124 (MQ=255)                                                                                                                                                         tGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTcc                                                                                                                                                                                                                >  1:19345/1‑105 (MQ=255)                                                                                                                                                         tGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTcc                                                                                                                                                                                                                >  1:19346/1‑105 (MQ=255)                                                                                                                                                         tGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTcc                                                                                                                                                                                                                >  1:19347/1‑105 (MQ=255)                                                                                                                                                                ccTCGGCCTG‑CTGCATCTT‑GGACGCCATTGACCGTGACCGGCCAGACGGTGGGGCGAGAA‑CCTTGAATGGTGGTCAGGCGTCCGAGCGACC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAGAAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCATGCTT‑CCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑GGTggtatacg                                                                >  1:374705/1‑236 (MQ=255)                                                                                                                                                                           ctgcATC‑TGGGACGCCA‑TGACCGTGACCGGCCAGACGGTGGGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGACGGGGCAACa                                                                                            >  1:374706/1‑202 (MQ=255)                                                                                                                                                                                                             aGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGAC‑GGGCAACATCGCTCCGGa                                                                                  <  1:19349/178‑1 (MQ=255)                                                                                                                                                                                                                     gggCGAGAA‑‑CTTG‑ATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTTCCCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑GGTGATCAAGGCCACGGCGATCGACCCCGTCggt                                         <  1:374707/210‑1 (MQ=255)                                                                                                                                                                                                                                 ttGAATGGTGG‑CAGGCGTCCGAGCG‑CCGGGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGACGGGGCAACATCGCTCCGGAAGGTTCGGGTGATCAAGGCCACGGCGATCGA‑‑CCGTCGGTGGTGGGCGAAGAT‑gggcgt                     >  1:374708/1‑216 (MQ=255)                                                                                                                                                                                                                                      tggtgg‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGC‑AAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑GGTGATc                                                                    <  1:19350/167‑1 (MQ=255)                                                                                                                                                                                                                                                  gTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAGTTGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑GGTGATCAAGGCCACGGCGATCg                                                    >  1:1155132/1‑174 (MQ=255)                                                                                                                                                                                                                                                     cGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑GGTGATCAAGGCCACGGCGATCGA‑CCCGTCGGTGGTGGGCGAAGATGGGCGTATACCACCACACCGGCcggg  >  1:19351/1‑219 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                    CGGCGGGCTGCACGATCCCGGACGTTGAGCACTGGACGCGCATCAACCGTAAAGTGCCGCGTCTGGTGAGCGTGCTGCCCAACGGCCCGGACTATCACCCGACCGTGCGCGCCTTCCTCGCGGGCGGCGTGCCGGA‑GGTGATGC‑TCCACCTGCGCGACCTCGGCCTG‑CTGCATC‑T‑GGACGCCA‑TGACCGTGACCGGCCAGACGGT‑GGGCGAGAA‑CCTTGAATGGTGG‑CAGGCGTCCGAGCG‑CC‑GGGCGCGCTTCCGCCAG‑TGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAG‑AAGGCAAAAGCGAAAGGGCTGACCTCGACGGTC‑TGCTT‑CCCGAC‑GGGCAACATCGCTCCGGAAGGTTC‑GGTGATCAAGGCCACGGCGATCGA‑CCCGTCGGTGGTGGGCGAAGAT‑GGCGTATACCACCACACCGGCCGGG  >  NC_000913/284165‑284617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑