Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	287484	287808	325	16 [15]	[15] 17	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase

GGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCTGCTACTACAACAGCAAAAACTGGAGCTACTGCTTTGTGGACTACGAGGAGGGACAGGGTAGA  >  NC_000913/287710‑288084                                                                                                    |                                                                                                                                                                                                                                                                                               ggcAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGctc                                                                                                                                                                                                         <  1:374954/180‑1 (MQ=255)                        gAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGc                                                                                                                                                                                                           >  1:19493/1‑155 (MQ=255)                         aaaGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGAt                                                                                                            >  1:19494/1‑245 (MQ=255)                                  cAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGACCCCGGAGCTGCA‑GACCCCTGCGCATTCCGTTCGACGACACCCCTCGGCTCGCT‑CACCGCGCGCCCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCCAATCGACCGt                                                                                                                                                            <  1:374956/196‑1 (MQ=255)                                  cAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTc                                                                                                                                                                                       <  1:374955/165‑1 (MQ=255)                                       aGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACACCCCTCGGCTCGCT‑Ca                                                                                                                                                                                                                                     >  1:1168976/1‑117 (MQ=255)                                                          gTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCt                                                                >  1:374958/1‑256 (MQ=255)                                                             ccGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACG‑CTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCACTTTCGCCt                                                                                                                                >  1:19495/1‑190 (MQ=255)                                                             ccGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACG‑CTCGCTCAATTCGACCTTCA‑CCCAATCGACC‑TGGCGCGCCGCTGGCCAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTtc                                                                                                     >  1:19496/1‑215 (MQ=255)                                                              cGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCACGA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGaaaacgcg                                                                                                              <  1:374957/207‑6 (MQ=255)                                                                                  ttCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCCGGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCCGGGGCAGAAACGCGGATGGAGTTCTCGCCgg                                                                                              >  1:374961/1‑204 (MQ=255)                                                                                  ttCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCCGGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCCGGGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCTg                                                               >  1:374960/1‑235 (MQ=255)                                                                                              tCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTC‑GCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCTGCTACTACAACAGCAAAAACTGGAGCTACTGCTTTGTGGACTACGAGGAGGGACAGGGTAGa  >  1:19498/1‑281 (MQ=255)                                                                                                gCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCTCCACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGaaaacgcg                                                                                                              <  1:1061792/173‑6 (MQ=255)                                                                                                 cTTGACCCCGGAGCTGCA‑GACCCCTGCGCATTCCGTTCGACGACACCCCTCGGCTCGCT‑CACCGCGCGCCCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCTGCTACTACAACAGCaaaa                                              <  1:374959/240‑1 (MQ=255)                                                                                                    gA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCTGCTACTACAACAGCAAAAACTGGAGCTACTGCttgtg                           <  1:19497/251‑4 (MQ=255)                                                                                                    gA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCTGCTACTACAACAGCAAAAACTGGAGCTACTGCTTTGTGGACTACga                  >  1:19499/1‑260 (MQ=255)                                                                                                    |                                                                                                                                                                                                                                                                                               GGCAAGCACGCGCAGCTGACCGTGAAAGGCCCGCAAGTAGCCGAGCAGCCTGCAGCCGTTCCGGGCAACTGGCGGGACGATTTCGACGCCAGTTCGCTTGA‑CCCGGAGCTGCA‑GA‑CCCTGCGCATTCCGTTCGACGACA‑CCCTCGGCTCGCT‑CACCGCGCG‑CCC‑GGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCA‑CCCAATCGACCGTGGCGCGCCGCTGG‑CAGCAC‑TTCGCCTTCC‑GGGCAGAAACGCGGATGGAGTTCTCGCCGGTGCACTTCCAGCAGAGCGCGGGGCTGACCTGCTACTACAACAGCAAAAACTGGAGCTACTGCTTTGTGGACTACGAGGAGGGACAGGGTAGA  >  NC_000913/287710‑288084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑