New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 598256	7 (0.520)	7 (0.540)	6/256	NT	42.7%	coding (778/1224 nt)	cusB	copper/silver export system membrane fusion protein
	?	NC_000913	636166 =	12 (0.920)					coding (404/1221 nt)	ybdN	putative PAPS reductase/DUF3440 domain‑containing protein YbdN

GTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCAGATTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATG  >  NC_000913/635981‑636437                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                gTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCa                                                                                                                                                                                                                      <  1:115829/245‑1 (MQ=255)       ccGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGt                                                                                                                                                                                                                                                              >  1:145361/1‑199 (MQ=255)                        tcgtcgGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGc                                                                                                                                                                                                       >  1:59377/1‑237 (MQ=255)                           tcgTCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCAt                                                                                                                                                                                                    <  2:59377/237‑1 (MQ=255)                                                                                              tGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATc                                                                                                                                                                                                                                                     >  2:1490/1‑121 (MQ=255)                                                                                              tGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACa                                                                                                                                                                                                                         >  2:251643/1‑149 (MQ=255)                                                                                               gccaaagataacgtggtagcgaaaattcagggtatggacccggtgtgggtcactgctgcgatcccggagtctatcgcctggctggtgaaagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATg                                                                                                                               >  1:139490‑M2/92‑238 (MQ=255)                                                                                               gccaaagataacgtggtagcgaaaattcagggtatggacccggtgtgggtcactgctgcgatcccggagtctatcgcctggctggtgaaagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAg                                                                                           >  1:74947‑M2/92‑274 (MQ=255)                                                                                                 cGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTg                                                                                                                                                                                                                                                  <  1:1490/121‑1 (MQ=255)                                                                                                 cGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCa                                                                                                                                                                                                                      <  1:251644/149‑1 (MQ=255)                                                                                                  gATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTa                                                                                        <  1:29759/274‑1 (MQ=255)                                                                                                                                        ggtgtgggtcactgctgcgatcccggagtctatcgcctggctggtgaaagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACg                                                                                                                                                                                                                                      >  2:242668‑M2/51‑94 (MQ=255)                                                                                                                                        cGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTc                                                                                                                                                                                                  >  1:197747/1‑130 (MQ=255)                                                                                                                                           gtgggtcactgctgcgatcccggagtctatcgcctggctggtgaaagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTAc                                                                                                                                                                                                                                   <  1:242669‑M2/47‑1 (MQ=255)                                                                                                                                           cAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCggg                                                                                                                                                                                               <  2:197746/130‑1 (MQ=255)                                                                                                                                                            tcccggagtctatcgcctggctggtgaaagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTc                                                                                                                                                                                                  >  1:25974‑M2/31‑110 (MQ=255)                                                                                                                                                               cggagtctatcgcctggctggtgaaagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCggg                                                                                                                                                                                               <  2:25974‑M2/83‑1 (MQ=255)                                                                                                                                                               cggagtctatcgcctggctggtgaaagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAAAATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACACAGATTTTTTTGCCCAttt                           >  1:52309‑M2/28‑274 (MQ=255)                                                                                                                                                                                ctggTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTTCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCa                                                                                                         >  1:263186/1‑179 (MQ=255)                                                                                                                                                                                   gTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAggg                                                                                                      <  2:263185/179‑1 (MQ=255)                                                                                                                                                                                       aagCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGc                                                                                                                                                                                                       >  1:192662‑M2/4‑78 (MQ=255)                                                                                                                                                                                        agCGGAAAAATTCAGCGTCGGTTTTCGCTTCTTGTGTGTGTTGACGGACCCATTCGACATCAGGTTCCCCGCACTGCCATTCGGGTTGGTAGTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCAGATTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATg  <  2:52309‑M2/272‑1 (MQ=255)                                                                                                                                                                                          cAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCAt                                                                                                                                                                                                    <  2:192661/78‑1 (MQ=255)                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                GTGCGGCCGTAGTCCAGGGTTTATCGTCGGCAAAACGTTGTTTATTTAAACTGGCGATGGCGACAAAACGGTTGTAGGACTCATCCGCACGGATGCCGATCATCATCGCCGCCGGACGTTTTTGTGAAAACCATTCGGCAAACTCACGTACAAATTGTTCGAAGGTCATGCCTGGCTGGTAAAAGCAGAAAAAGTCAGGGTCGGTTATCGCATCTTGGGGAGGTTGACGTACCCATTCGACATCAGGTTCCCAGCACTGCCATTCGGGTTGGTATTGTGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCAGATTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATG  >  NC_000913/635981‑636437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.