Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,515,480 | C→T | 100% | G400S (GGC→AGC) | fecA ← | ferric citrate outer membrane transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,515,480 | 0 | C | T | 100.0% | 46.1 / NA | 14 | G400S (GGC→AGC) | fecA | ferric citrate outer membrane transporter |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (6/8); total (6/8) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CGGACGGCAACTGCCCGCTGCTGGTGGCGGTGTAGTAACGCATTTCATGCGTTGATTCATTCAAATAGCGATAGCCCACGCCCACTTCGTGCGCGGAAGGGCCGATCATAAAGATCTGGCTGTAGCGTGGCTCAATACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCCGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCGCCAGCTTGCGACGACCCCAGAAGCGGTCATACGGGCGGGTGGATTGCCAGCGATCGGCGTCGTAATCCGCGCGAGACAGGCCACCGGGCATGTCGGCTTCACCGTCGTAATATTGCAGCAGGCTGTTGAAGGTG > NC_000913/4515285‑4515694 | cGGACGGCAACTGCCCGCTGCTGGTGGCGGTGTAGTAACGCATTTCATGCGTTGATTCATTCAAATAGCGATAGCCCACGCCCACTTCGTGCGCGGAAGGGCCGATCATAAAGATCTGGCTGTAGCGTGGCTCAATACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATg < 1:148033/230‑1 (MQ=255) gcgcGGAAGGGCCGATCATAAAGATCTGGCTGTAGCGTGGCTCAATACCGCGCACCCAGGAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGACTTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCGCCAGCTTGCGACGACCCCAGAAGCGGTCATACGGGCGGGTGGATTGCCAGCGACCGGCGTCGTAATCCGCGCGAGACAGGCCACCgg > 1:217989/1‑273 (MQ=255) gCTCAATACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATgctgg > 1:218600/1‑116 (MQ=255) cTCAATACCGCGCACCCAGTAGTTACGCGGCGGGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCGCCAGCTTGCGACGACCCCAGAAGCGGTCATACGGGCGGGTGGATTGCCAGCGATCGGCGTCGTAATCCGCGCGAGACAGGCCACCGGGCATGTCGGCTTCACCGTCGTAATATTGCAGCAGGCTGTTg < 1:57860/274‑1 (MQ=255) cTCAATACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCa > 1:149432/1‑74 (MQ=255) cTCAATACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATg > 2:149806/1‑111 (MQ=255) cAATACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATgctggctg < 2:218599/116‑1 (MQ=255) aaTACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAggg < 2:149431/74‑1 (MQ=255) aaTACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATgctg < 1:149807/111‑1 (MQ=255) aCCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGc > 2:48715/1‑137 (MQ=255) gcgcACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCg < 1:48715/137‑1 (MQ=255) gcACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCGCCAGCTTg > 2:240333/1‑143 (MQ=255) cgcAGTAGTTAGGCGGGGAGGGGGTGATGCGTTTGCCTTGCTCCAGGGAGCTGCTGCGCATGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCGCCAGCTTGCGACGACCCCAGAAGCGGTCAGACGGGCGGGTGGATTGCCAGCGATCGGCGTCGTAATCCGCGCGAGACAGGCCACCGGGCATGTCGGCTTCACCGTCGTAATATTGCAGCAGGCTGTTGAAGgtg < 1:230316/264‑1 (MQ=255) cccAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCTGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCGCCAGCTTGcga < 1:240334/143‑1 (MQ=255) | CGGACGGCAACTGCCCGCTGCTGGTGGCGGTGTAGTAACGCATTTCATGCGTTGATTCATTCAAATAGCGATAGCCCACGCCCACTTCGTGCGCGGAAGGGCCGATCATAAAGATCTGGCTGTAGCGTGGCTCAATACCGCGCACCCAGTAGTTACGCGGCGAGAGGGTGATGCGTTTGCCTTGCTCCAGGTAGCCGCTGCGCAGGGTTTGGGTGTAGAACCCCTGAATGTTGAATTTATGCTGGCTGTCTGGCTGGAACTGGTAGCCCAGGCTCGCCAGCTTGCGACGACCCCAGAAGCGGTCATACGGGCGGGTGGATTGCCAGCGATCGGCGTCGTAATCCGCGCGAGACAGGCCACCGGGCATGTCGGCTTCACCGTCGTAATATTGCAGCAGGCTGTTGAAGGTG > NC_000913/4515285‑4515694 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |