New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3463082 =	12 (0.670)	4 (0.230)	4/334	NT	22.4%	coding (159/984 nt)	gspK	Type II secretion system protein GspK
	?	NC_000913	3463296 =	16 (0.920)					coding (373/984 nt)	gspK	Type II secretion system protein GspK

AGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGACAGACAGACCACGTTGCAGCAGTACTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGCCCCGGCATAGTGCCAATCAGATGCTTTTTCTGACTGGCGA  >  NC_000913/3463024‑3463483                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                            agcTTCAGCGAACCCGCCAGGTAAACCCTCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGACAGACAGACCACGTTGCAGCAGTACTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCa                                                                                                                                                                                            <  1:41916/274‑1 (MQ=255)              ccGTCAGGTAAACCATCATCTGCAACTGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGACAGACAGACCACGTTGCAGCAGTACTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGt                                                                                                                                                                                  <  1:82885/271‑1 (MQ=255)                                                        aCTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGACAGACAGACCACGTTGCAGCAGTACTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAACAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATga                                                                                                                                      >  1:214051/1‑273 (MQ=255)                                                                                                                  cagacCACGTTGCAGCAGTACTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGgcg                                                                           >  1:141881/1‑274 (MQ=255)                                                                                                                   agcccACTTTGCATAGGTACTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGgcgc                                                                          <  2:214051/271‑1 (MQ=255)                                                                                                                                            acaGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCCGAAGATAGCTTTTACCAAAGCCAg                                                 >  1:15874/1‑274 (MQ=255)                                                                                                                                               gCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTatcgatc                                                                                                                                                      >  1:233973/1‑170 (MQ=255)                                                                                                                                                ccAAAACAGTTGCAGTTGGAAGATGGAAATACAGTGAATGGGCAGTTACGCGAGGCCCAGCACGGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGAcg                                              <  1:280165/273‑1 (MQ=255)                                                                                                                                                  acaacaGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATcgcg                                                                                                                                                   <  2:233973/170‑1 (MQ=255)                                                                                                                                                         ttGCAGCGGGAAGATGGAAATACAGGGAAGTGGCAGTTACGCAATGCCCGGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGCCCCGGc                                    <  2:15874/274‑1 (MQ=255)                                                                                                                                                           gCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGcaatcaa                                                                                                                        >  1:52013/1‑188 (MQ=255)                                                                                                                                                              gCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCg                                                                                                                     <  2:52013/188‑1 (MQ=255)                                                                                                                                                                      cttccagctgcaactgttgtggctgtgcccagtactgctgcaacgtggtctgtctgtcgttatctttaacgtcctgggtgaggctggcaagcgcaagtttctccgccCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACCCACCACGCTTTc                                                                                 >  1:257345‑M2/108‑216 (MQ=255)                                                                                                                                                                         ccagctgcaactgttgtggctgtgcccagtactgctgcaacgtggtctgtctgtcgttatctttaacgtcctgggtgaggctggcaagcgcaagtttctccgccCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACCCACCACGCTTTCACg                                                                              <  2:257345‑M2/112‑1 (MQ=255)                                                                                                                                                                               cAGTGAAGTGGCAGTTACGCGATGCCACGCACTGTTTTAATCTCAAGGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTCCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGCCCCGGCATAGTGCCAATCAGATGCtttt              <  1:189729/274‑1 (MQ=255)                                                                                                                                                                                   gAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCACAACCCCCCCCCGGCAAAGGTCCAAACAGAAGCTTTTTCtt          >  2:189729/1‑273 (MQ=255)                                                                                                                                                                                                                     aaTCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGCCCCGGCATAGTGCCAATCAGATGCTTTTTCTGACTGGCGa  <  1:269286/248‑1 (MQ=255)                                                                                                                                                                                                                                    gCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCAc                                                                               >  1:225988/1‑156 (MQ=255)                                                                                                                                                                                                                                       aaaaTCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGgc                                                                            <  2:225988/156‑1 (MQ=255)                                                                                                                                                                                                                                                              aagcgcaagtttctccgccCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGCCCCGGCATa                                 >  1:64392‑M2/20‑176 (MQ=255)                                                                                                                                                                                                                                                                 cgcaagtttctccgccCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGCCCCGGCATAGTg                              <  2:64392‑M2/160‑1 (MQ=255)                                                                                                                                                                                                                                                                                 cAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGcccc                                       >  1:242862/1‑151 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                            AGCTTCAGCGAACCCGCCAGGTAAACCATCATCTGCAACGGCAATATGATATTGAACTGGCGGAGAAACTTGCGCTTGCCAGCCTCACCCAGGACGTTAAAGATAACGACAGACAGACCACGTTGCAGCAGTACTGGGCACAGCCACAACAGTTGCAGCTGGAAGATGGCAATACAGTGAAGTGGCAGTTACGCGATGCCCAGCACTGTTTTAATCTCAATGCGTTAGCAAAAATCTCTGACGACCCGCTGGCTTCCCCTGATTTCCCCGCCCAGGTATTCAGTGCGCTGCTGATTAACGCCGGTATCGATCGCGGAAACACCGATGAGATCGTGCAATCAATCGCTGACTATATTGATGTCGATGACTCACCACGCTTTCACGGCGCAGAAGATAGCTTTTACCAAAGCCAGACGCCGCCCCGGCATAGTGCCAATCAGATGCTTTTTCTGACTGGCGA  >  NC_000913/3463024‑3463483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.