New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3717730 =	31 (0.990)	4 (0.130)	4/394	NT	12.4%	coding (421/975 nt)	ghrB	glyoxylate reductase
	?	NC_000913	= 3919436	27 (0.910)					coding (422/1542 nt)	atpA	ATP synthase F1 complex subunit alpha

ATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCCGGCAGGGAGATCATTTC  >  NC_000913/3919193‑3919707                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                ttgttgtTAGCCAGTGCCCCGTTCTCTTCCAGTTTACGTACCACGTTGGAAATGGGGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGAt                                                                                                                                                                                                                                                     <  2:96492/268‑1 (MQ=255)      gttggaacgTGCCCCGTGCTTTTCCAGTTTACGTACCCAGTTGGAAATGGTGGACGCTGTCTGGCCGATAGCGACATAGATACAGTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACTCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCtt                                                                                                                                                                                                                                                <  2:346028/264‑1 (MQ=255)                  gcCGTGCTCTTCCAGTTTACGTACCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCCGAATCGCGCTGGTTGATGATGGCATCGCTAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGAACACGACCGATTGGGAACATGGAGTCGACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGCAGCGATTGCTTCTAcagccacaa                                                                                                                                                                                                                                    >  1:82064/1‑267 (MQ=255)                                 ttttctcaCCACGTTGGCATTGGTGGACGCTTTCTGGCCGATAGCGACATGGGTACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCa                                                                                                                                                                                                                     <  2:246883/265‑1 (MQ=255)                                   tACGTACCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCaac                                                                                                                                                                                                                   >  1:246883/1‑270 (MQ=255)                                                  aaaTGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAcagcag                                                                                                                                                                                                                                       >  2:33702/1‑237 (MQ=255)                                                   aaTGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCaga                                                                                                                                                                                                                                      <  1:33702/237‑1 (MQ=255)                                                              gtttCTGGCCGATAGCGACATAGGTACGTTTGTTACCGGAGGCAGGCTGAGTGATGAAGGAATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCATCGATTGGTGCAccc                                                                                                                                                                                        <  2:82064/271‑1 (MQ=255)                                                                            gCGACATAGATACATTTGATACCGGAATCGAGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGCTGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGACATACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGCAAAGCCGACGTGATCCCAGGGTCTTTTACCGTCGATTGTTTGACCCAGAAGGTTAAAca                                                                                                                                                                           >  1:325571/1‑271 (MQ=255)                                                                                                                gggtgtttgcagccGATGGCCCGTGCGGTTTTGCCTGTTGGACGGCCACCCATGGTCAATTCACCCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTTTAACCGGTCTGTACCGGCTGATCTACGGACTGACGTGCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAg                                                                                                                                      <  2:325571/259‑1 (MQ=255)                                                                                                                            tCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCa                                                                                                                                                                                           >  1:224624/1‑207 (MQ=255)                                                                                                                             cGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCAc                                                                                                                                                                                          <  2:224624/207‑1 (MQ=255)                                                                                                                                                     tCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAg                                                                                                                                      <  1:201833/235‑1 (MQ=255)                                                                                                                                                                          aTTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGactgacgttcaccataaaacactgggcattgtcgggatgggacggatcggcatggcgctggcacaacgtgcgcactttggcttcaacatgc                                                                                                                                                                                      <  2:423843‑M2/166‑92 (MQ=255)                                                                                                                                                                           ttCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGactgacgttcaccataaaacactgggcattgtcgggatgggacggatcggcatggcgctggcacaacgtgcgcactttggcttcaacatgcc                                                                                                                                                                                     >  1:423843‑M2/1‑74 (MQ=255)                                                                                                                                                                                                 gggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCagag                                                                                                                                                                                                                                     >  2:262141/1‑96 (MQ=255)                                                                                                                                                                                                 gggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCa                                                                                                                                                                                           >  2:320428/1‑138 (MQ=255)                                                                                                                                                                                                  ggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATACCGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATaac                                                                          <  1:50808/250‑1 (MQ=255)                                                                                                                                                                                                  ggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAgaga                                                                                                                                                                                                                                    <  1:262141/96‑1 (MQ=255)                                                                                                                                                                                                  ggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCAc                                                                                                                                                                                          <  1:320428/138‑1 (MQ=255)                                                                                                                                                                                                  ggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAgg                                                                                              <  1:340435/230‑1 (MQ=255)                                                                                                                                                                                                                aCGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACt                                                                                                                >  2:363984/1‑198 (MQ=255)                                                                                                                                                                                                                 cGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACtt                                                                                                               <  1:363984/198‑1 (MQ=255)                                                                                                                                                                                                                    cTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAAc                                                                                                                                                                             >  1:259580/1‑133 (MQ=255)                                                                                                                                                                                                                     tttATAACCGGTCTGTACCTGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGGTTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAg                                 <  1:160685/272‑1 (MQ=255)                                                                                                                                                                                                                     tttATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAAcc                                                                                                                                                                            <  2:259580/133‑1 (MQ=255)                                                                                                                                                                                                                                            gATCTACGGactgacgttcaccataaaacactgggcattgtcgggatgggacggatcggcatggcgctggcacaacgtgcgcactttggcttcaacatgcccatcctctataacgcgcgccgccaccataaagaagcagaagaacgcttcaa                                                                                                                                  <  1:330013‑M2/152‑144 (MQ=255)                                                                                                                                                                                                                                            gATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCAt                                                                                                           >  2:306473/1‑175 (MQ=255)                                                                                                                                                                                                                                            gATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATCACAACCGCCCCTACAGAACCCCGCCCGAGGTACCATGCCAAAGCGGCAAAGTCACCCCGCAgggg           >  2:106963/1‑270 (MQ=255)                                                                                                                                                                                                                                             aTCTACGGactgacgttcaccataaaacactgggcattgtcgggatgggacggatcggcatggcgctggcacaacgtgcgcactttggcttcaacatgcccatcctctataacgcgcgccgccaccataaagaagcagaagaacgcttcaac                                                                                                                                 >  2:330013‑M2/1‑8 (MQ=255)                                                                                                                                                                                                                                             aTCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATg                                                                                                          <  1:306473/175‑1 (MQ=255)                                                                                                                                                                                                                                                 aCGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCCAGGTCAGCGTACGGACCCATAACAACCGCACCCACAGAGTCGCGCTCGCGGTTCAGTGCGATAGCGTAACGGTTACCCGGCAGGGAGATCAt     >  1:210391/1‑272 (MQ=255)                                                                                                                                                                                                                                                 aCGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAg                                                                                               >  2:351444/1‑182 (MQ=255)                                                                                                                                                                                                                                                 aCGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGAc                                                                                 >  1:22686/1‑196 (MQ=255)                                                                                                                                                                                                                                                 aCGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTGCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCCGGCAGGGAGATCaa     >  1:317938/1‑271 (MQ=255)                                                                                                                                                                                                                                                  cGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAgg                                                                                              <  1:351444/182‑1 (MQ=255)                                                                                                                                                                                                                                                  cGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGAcc                                                                                <  2:22686/196‑1 (MQ=255)                                                                                                                                                                                                                                                    gACTGACGTTCGATAACGCCCTGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATGGGTGCACCCAGGGTGTTAACCAAACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCCGGCAGGGAGATCATTTc  <  1:106963/272‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                ATGGTGTTAGCCAGTGCGCCGTGCTCTTCCAGTTTACGTACCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCCGGCAGGGAGATCATTTC  >  NC_000913/3919193‑3919707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.