BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	849,636	(C)_5→4	coding (462/888 nt)	rhtA ←	L‑threonine/L‑homoserine exporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	849,632	0	C	.	100.0%	1226.0 / NA	234	coding (466/888 nt)	rhtA	L‑threonine/L‑homoserine exporter
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (107/127); total (107/127)

Only 100 of 256 total aligned reads displayed.

ATTAACGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCA  >  NC_000913/849532‑849728

aTTAACGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGc                                                                                                  >  1:1263959/1‑101 (MQ=255)

  tAACGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccc                                                                                                >  2:1263961/1‑101 (MQ=255)

   aaCGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGcccc                                                                                               <  2:1263392/101‑1 (MQ=255)

   aaCGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGcccc                                                                                               >  1:1263963/1‑101 (MQ=255)

     cGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccccag                                                                                             >  1:1263966/1‑99 (MQ=255)

     cGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccccag                                                                                             <  2:1263631/101‑3 (MQ=255)

      gCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccccagt                                                                                            <  1:1263344/101‑4 (MQ=255)

      gCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccccagt                                                                                            <  1:1263492/101‑4 (MQ=255)

      gCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccccagt                                                                                            <  1:1263520/101‑4 (MQ=255)

       cTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccccagtg                                                                                           <  2:1263572/101‑5 (MQ=255)

       cTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGccccagtg                                                                                           >  2:1263970/1‑97 (MQ=255)

        tGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGc                                                                                         <  2:1263558/101‑1 (MQ=255)

        tGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGc                                                                                         >  2:1263972/1‑101 (MQ=255)

           aaTCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAg                                                                                      <  1:1263695/101‑1 (MQ=255)

            aTCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAgc                                                                                     <  2:1263554/101‑1 (MQ=255)

            aTCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAgc                                                                                     >  1:1263975/1‑101 (MQ=255)

             tCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAgcg                                                                                    >  1:1263978/1‑101 (MQ=255)

              cAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAgcgc                                                                                   <  1:1263574/101‑1 (MQ=255)

               aaCGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGca                                                                                  <  2:1263602/101‑1 (MQ=255)

                aCGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGcac                                                                                 <  1:1263511/101‑1 (MQ=255)

                aCGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGcac                                                                                 <  1:1263623/101‑1 (MQ=255)

                aCGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGcac                                                                                 <  2:1263186/101‑1 (MQ=255)

                 cGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGcaca                                                                                >  2:1263982/1‑101 (MQ=255)

                   aaCCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGc                                                                              >  2:1263986/1‑101 (MQ=255)

                    aCCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGcc                                                                             <  1:1263429/101‑1 (MQ=255)

                     ccAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCg                                                                            <  2:1263924/101‑1 (MQ=255)

                       aaTTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGt                                                                          <  1:1263588/101‑1 (MQ=255)

                       aaTTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGt                                                                          >  2:1263990/1‑101 (MQ=255)

                       aaTTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGt                                                                          >  2:1263992/1‑101 (MQ=255)

                         ttGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTa                                                                        <  2:1263473/101‑1 (MQ=255)

                         ttGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTa                                                                        <  2:1263362/101‑1 (MQ=255)

                          tGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTaa                                                                       <  1:1263437/101‑1 (MQ=255)

                          tGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTaa                                                                       <  2:1263382/101‑1 (MQ=255)

                           gCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTaaa                                                                      >  1:1263995/1‑101 (MQ=255)

                            ccACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAAt                                                                     <  1:1263411/101‑1 (MQ=255)

                             cACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATc                                                                    >  2:1263996/1‑101 (MQ=255)

                               ccGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGa                                                                  <  1:1263419/101‑1 (MQ=255)

                                cGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGAc                                                                 <  1:1263321/101‑1 (MQ=255)

                                  tCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACAt                                                               <  1:1263544/101‑1 (MQ=255)

                                   cGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATg                                                              >  1:1264000/1‑101 (MQ=255)

                                    gCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATgg                                                             >  2:1264002/1‑101 (MQ=255)

                                    gCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATgg                                                             <  1:1263354/101‑1 (MQ=255)

                                     cAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATggg                                                            >  2:1264005/1‑101 (MQ=255)

                                      aGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGa                                                           >  1:1264006/1‑101 (MQ=255)

                                      aGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGa                                                           <  1:1263158/101‑1 (MQ=255)

                                         gCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAAc                                                        <  1:1263664/101‑1 (MQ=255)

                                         gCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAAc                                                        <  2:1263501/101‑1 (MQ=255)

                                            aTGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTc                                                     >  1:1264012/1‑101 (MQ=255)

                                             tGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCt                                                    <  1:1263340/101‑1 (MQ=255)

                                             tGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCt                                                    <  2:1263758/101‑1 (MQ=255)

                                                 ccGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGcc                                                >  1:1264014/1‑101 (MQ=255)

                                                  cGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGccc                                               <  2:1263522/101‑1 (MQ=255)

                                                   gCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGcccc                                              <  1:1263454/101‑1 (MQ=255)

                                                   gCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGcccc                                              >  2:1264016/1‑101 (MQ=255)

                                                   gCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGcccc                                              <  2:1263806/101‑1 (MQ=255)

                                                   gCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGcccc                                              <  1:1263735/101‑1 (MQ=255)

                                                    cTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCa                                             >  1:1264019/1‑101 (MQ=255)

                                                      ccTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGc                                           <  1:1263378/101‑1 (MQ=255)

                                                      ccTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGc                                           >  2:1264020/1‑101 (MQ=255)

                                                       cTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCg                                          <  1:1263784/101‑1 (MQ=255)

                                                       cTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCg                                          >  1:1264022/1‑101 (MQ=255)

                                                       cTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCg                                          <  1:1263555/101‑1 (MQ=255)

                                                        tGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCgg                                         <  2:1263597/101‑1 (MQ=255)

                                                          cgcgTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTa                                       <  2:1263646/101‑1 (MQ=255)

                                                            cgTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGc                                     >  2:1264027/1‑101 (MQ=255)

                                                            cgTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGc                                     <  2:1263699/101‑1 (MQ=255)

                                                            cgTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGc                                     <  1:1263469/101‑1 (MQ=255)

                                                              ttGCCCACTTAAAATTTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAg                                            <  2:1263478/92‑1 (MQ=255)

                                                              ttGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAg                                   >  1:1264028/1‑101 (MQ=255)

                                                              ttGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAg                                   <  2:1263577/101‑1 (MQ=255)

                                                               tGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAgg                                  >  2:1264030/1‑101 (MQ=255)

                                                                 cccACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGaa                                >  1:1264033/1‑101 (MQ=255)

                                                                  ccACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAg                                                                               <  2:1263440/53‑1 (MQ=255)

                                                                  ccACTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAAc                               >  2:1264036/1‑101 (MQ=255)

                                                                    aCTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACca                             >  1:1264039/1‑101 (MQ=255)

                                                                    aCTTAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACca                             >  2:1264041/1‑101 (MQ=255)

                                                                      ttAAAATGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACcaca                           >  2:1264045/1‑101 (MQ=255)

                                                                        aaaaTGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGa                         >  2:1264048/1‑101 (MQ=255)

                                                                         aaaTGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGAc                        >  1:1264049/1‑101 (MQ=255)

                                                                          aaTGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGAcc                       >  2:1264051/1‑101 (MQ=255)

                                                                           aTGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCa                      <  2:1263611/101‑1 (MQ=255)

                                                                            tGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCaa                     <  2:1263783/101‑1 (MQ=255)

                                                                            tGTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCaa                     >  2:1264055/1‑101 (MQ=255)

                                                                             gTAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAg                    >  2:1264057/1‑101 (MQ=255)

                                                                              tAAATAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGa                   >  1:1264058/1‑101 (MQ=255)

                                                                                aaTAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAAc                 <  1:1263913/101‑1 (MQ=255)

                                                                                 aTAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAAcc                <  2:1263260/101‑1 (MQ=255)

                                                                                 aTAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAAcc                <  1:1263716/101‑1 (MQ=255)

                                                                                  tAGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCg               <  2:1263658/101‑1 (MQ=255)

                                                                                   aGCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGc              >  1:1264061/1‑101 (MQ=255)

                                                                                    gCCCAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGcc             <  1:1263607/101‑1 (MQ=255)

                                                                                     cccAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCa            <  1:1263648/101‑1 (MQ=255)

                                                                                     cccAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCa            <  2:1263527/101‑1 (MQ=255)

                                                                                      ccAACAAGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAg           >  2:1264065/1‑101 (MQ=255)

                                                                                       caacaaGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCACCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGc          >  1:1264066/1‑101 (MQ=255)

                                                                                        aacaaGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGca         >  1:1264071/1‑101 (MQ=255)

                                                                                        aacaaGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGca         >  2:1264070/1‑101 (MQ=255)

                                                                                         acaaGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGcac        >  1:1264074/1‑101 (MQ=255)

                                                                                           aaGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTACCAGGAACCACAGACCAAGAACCGCCAGCACaa      >  2:1264077/1‑101 (MQ=255)

                                                                                            aGCCCCGG‑CCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAAc     >  1:1264080/1‑101 (MQ=255)

ATTAACGCTGCAATCAACGAACCAATTGCCACCGTCGCAGGGCCATGTTCCGCTCCTGCGCGTTGCCCACTTAAAATGTAAATAGCCCAACAAGCCCCGGCCCCCAGTGCCAGCGCACAGCCGGTTAAATCGACATGGGAAACGTCTTGCCCCAGCGGTAGCAGGAACCACAGACCAAGAACCGCCAGCACAACCCA  >  NC_000913/849532‑849728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`