Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 565,791 C→T C63Y (TGC→TAC)  intD ← DLP12 prophage; putative integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913565,7910CT100.0% 1163.7 / NA 275C63Y (TGC→TAC) intDDLP12 prophage; putative integrase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (149/126);  total (149/126)

Only 100 of 290 total aligned reads displayed.

TAAGCCTTATACCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCGTTT  >  NC_000913/565693‑565888
                                                                                                  |                                                                                                 
tAAGCCTTATACCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTaggtag                                                                                                 >  2:844357/1‑101 (MQ=255)
 aaGCCTTATACCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTtaggtagg                                                                                                <  1:844061/101‑1 (MQ=255)
  aGCCTTATACCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTaggtaggc                                                                                               >  1:844359/1‑101 (MQ=255)
     cTTATACCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCctc                                                                                            >  1:844362/1‑101 (MQ=255)
      ttATACCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCctct                                                                                           <  2:843899/101‑1 (MQ=255)
       tataCCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCtt                                                                                          <  2:843823/101‑1 (MQ=255)
       tataCCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCtt                                                                                          >  2:844365/1‑101 (MQ=255)
         taCCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCa                                                                                        <  1:843881/101‑1 (MQ=255)
         taCCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCa                                                                                        >  1:844368/1‑101 (MQ=255)
           cccTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCaaa                                                                                      <  2:843866/101‑1 (MQ=255)
             cTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAg                                                                                    >  2:844372/1‑101 (MQ=255)
              tCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGt                                                                                   >  1:844373/1‑101 (MQ=255)
               cAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAg                                                                                    <  2:843662/99‑1 (MQ=255)
               cAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTg                                                                                  <  2:843828/101‑1 (MQ=255)
               cAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTg                                                                                  >  1:844375/1‑101 (MQ=255)
                aaaaTGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCtt                                                                                          <  2:844153/92‑1 (MQ=255)
                aaaaTGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGa                                                                                 <  1:843766/101‑1 (MQ=255)
                 aaaTGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGAc                                                                                >  1:844380/1‑101 (MQ=255)
                  aaTGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACa                                                                               >  2:844382/1‑101 (MQ=255)
                   aTGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACAt                                                                              >  1:844385/1‑101 (MQ=255)
                   aTGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACAt                                                                              <  2:843884/101‑1 (MQ=255)
                   aTGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACAt                                                                              <  2:843922/101‑1 (MQ=255)
                    tGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATc                                                                             <  1:843911/101‑1 (MQ=255)
                     gTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCa                                                                            >  1:844389/1‑101 (MQ=255)
                      ttCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAg                                                                           >  2:844391/1‑101 (MQ=255)
                        cAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGt                                                                         >  1:844393/1‑101 (MQ=255)
                        cAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGt                                                                         <  2:844003/101‑1 (MQ=255)
                        aaaGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGt                                                                         <  1:844108/100‑1 (MQ=255)
                          aGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTaa                                                                       >  1:844398/1‑101 (MQ=255)
                          aGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTaa                                                                       >  2:844399/1‑101 (MQ=255)
                             cAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATc                                                                    >  2:844404/1‑101 (MQ=255)
                              aGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATcc                                                                   >  2:844406/1‑101 (MQ=255)
                                aaCTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATcccc                                                                 <  1:843802/101‑1 (MQ=255)
                                 aCTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCt                                                                <  2:843858/101‑1 (MQ=255)
                                  cTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTa                                                               <  1:844159/101‑1 (MQ=255)
                                     aaTCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCt                                                            <  1:843864/101‑1 (MQ=255)
                                      aTCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCtt                                                           <  2:844023/101‑1 (MQ=255)
                                        ccGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCtttt                                                         <  2:843944/101‑1 (MQ=255)
                                         cGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTc                                                        <  1:843651/101‑1 (MQ=255)
                                         cGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTc                                                        >  1:844411/1‑101 (MQ=255)
                                            cTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAg                                                              <  2:843918/92‑1 (MQ=255)
                                             ttttATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACt                                                    >  1:844415/1‑101 (MQ=255)
                                              tttATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTc                                                   <  1:843959/101‑1 (MQ=255)
                                               ttATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCg                                                  >  1:844418/1‑101 (MQ=255)
                                                tATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGc                                                 >  1:844420/1‑101 (MQ=255)
                                                 aTCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGcc                                                >  2:844422/1‑101 (MQ=255)
                                                  tCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCa                                               <  1:844075/101‑1 (MQ=255)
                                                    tGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCaga                                             >  2:844426/1‑101 (MQ=255)
                                                     gAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCagag                                            >  2:844429/1‑101 (MQ=255)
                                                      aaTCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGt                                           <  2:843963/101‑1 (MQ=255)
                                                      aaTCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGt                                           <  2:844213/101‑1 (MQ=255)
                                                        tCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTc                                         >  1:844432/1‑101 (MQ=255)
                                                        tCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTc                                         <  2:843978/101‑1 (MQ=255)
                                                        tCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTc                                         >  2:844433/1‑101 (MQ=255)
                                                         cGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCt                                        <  2:844011/101‑1 (MQ=255)
                                                         cGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCt                                        >  2:844436/1‑101 (MQ=255)
                                                           agagaTTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGc                                      >  2:844440/1‑101 (MQ=255)
                                                            gagaTTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCt                                     >  2:844443/1‑101 (MQ=255)
                                                            gagaTTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCt                                     >  1:844445/1‑101 (MQ=255)
                                                              gaTTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCttt                                   <  2:843968/101‑1 (MQ=255)
                                                               aTTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCtttt                                  <  2:843985/101‑1 (MQ=255)
                                                               aTTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCtttt                                  <  1:844019/101‑1 (MQ=255)
                                                                ttttttATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTc                                 >  2:844450/1‑101 (MQ=255)
                                                                  ttttATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTTAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGc                               <  2:843998/101‑1 (MQ=255)
                                                                  ttttATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGc                               <  1:843946/101‑1 (MQ=255)
                                                                   tttATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCt                              <  1:843984/101‑1 (MQ=255)
                                                                   tttATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCt                              >  1:844452/1‑101 (MQ=255)
                                                                    ttATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCtt                             <  2:843805/101‑1 (MQ=255)
                                                                     tATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTa                                                                        <  2:844133/57‑1 (MQ=255)
                                                                     tATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTg                            >  2:844455/1‑101 (MQ=255)
                                                                     tATCAGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTg                            >  1:844456/1‑101 (MQ=255)
                                                                         aGCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGt                        >  1:844459/1‑101 (MQ=255)
                                                                          gCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTg                       >  2:844463/1‑101 (MQ=255)
                                                                          gCTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTg                       <  2:843933/101‑1 (MQ=255)
                                                                           cTTTTTCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACCCGCCAGAGTTCTGCTTTTCGCTTGTCGTGc                      <  2:844141/101‑1 (MQ=255)
                                                                             ttttCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCaa                    >  2:844468/1‑101 (MQ=255)
                                                                             ttttCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCaa                    >  1:844467/1‑101 (MQ=255)
                                                                             ttttCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCaa                    <  2:844411/101‑1 (MQ=255)
                                                                                tCCTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTc                 >  1:844472/1‑101 (MQ=255)
                                                                                 ccTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTcc                >  2:844478/1‑101 (MQ=255)
                                                                                 ccTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTcc                >  1:844476/1‑101 (MQ=255)
                                                                                  cTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCt               >  1:844481/1‑101 (MQ=255)
                                                                                  cTCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCt               <  2:844088/101‑1 (MQ=255)
                                                                                  cTCAAGCCATCTTAGGTAGGCATCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCt               <  2:843907/101‑1 (MQ=255)
                                                                                   tCAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTg              >  2:844484/1‑101 (MQ=255)
                                                                                    cAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGa             >  1:844485/1‑101 (MQ=255)
                                                                                    cAAGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGa             <  1:844101/101‑1 (MQ=255)
                                                                                     aaGCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAg            >  2:844488/1‑101 (MQ=255)
                                                                                       gCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAgg                                                                          >  2:844492/1‑37 (MQ=255)
                                                                                       gCCATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCt          <  1:844404/101‑1 (MQ=255)
                                                                                        ccATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCtt         >  1:844495/1‑101 (MQ=255)
                                                                                        ccATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCtt         <  1:844042/101‑1 (MQ=255)
                                                                                         cATCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTg        >  1:844499/1‑101 (MQ=255)
                                                                                          aTCTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGc       >  2:844501/1‑101 (MQ=255)
                                                                                            cTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCg     >  2:844506/1‑101 (MQ=255)
                                                                                            cTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCg     <  1:843935/101‑1 (MQ=255)
                                                                                            cTTAGGTAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCg     >  1:844505/1‑101 (MQ=255)
                                                                                               aggtaggcCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCGttt  <  2:844036/101‑1 (MQ=255)
                                                                                               aggtaggcCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCGttt  >  1:844511/1‑101 (MQ=255)
                                                                                               aggtaggcCTCTACAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCGttt  <  2:844287/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
TAAGCCTTATACCCTCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCCTAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCGTTT  >  NC_000913/565693‑565888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑