BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,648,327	A→G	noncoding (34/84 nt)	agrB →	small RNA AgrB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,648,327	0	A	G	100.0%	1286.2 / NA	303	noncoding (34/84 nt)	agrB	small RNA AgrB
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (159/144); total (159/144)

Only 100 of 310 total aligned reads displayed.

CCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCA  >  NC_000913/3648229‑3648424

cctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAgccgcc                                                                                                 >  1:5361245/1‑101 (MQ=255)

  tccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCaa                                                                                               >  1:5361248/1‑101 (MQ=255)

     gCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTc                                                                                            <  2:5360843/101‑1 (MQ=255)

     gCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTc                                                                                            >  1:5361252/1‑101 (MQ=255)

         gCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAggg                                                                                        <  1:5360774/101‑1 (MQ=255)

          cTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGc                                                                                       >  2:5361257/1‑101 (MQ=255)

          cTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGc                                                                                       >  1:5361258/1‑101 (MQ=255)

            gaagaaATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTg                                                                                     >  2:5361263/1‑101 (MQ=255)

            gaagaaATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTg                                                                                     <  1:5360850/101‑1 (MQ=255)

               gaaATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGaa                                                                                  <  2:5360771/101‑1 (MQ=255)

                aaaTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGaaa                                                                                 >  2:5361266/1‑101 (MQ=255)

                 aaTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAg                                                                                <  2:5360638/101‑1 (MQ=255)

                  aTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGt                                                                               >  1:5361270/1‑101 (MQ=255)

                  aTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGt                                                                               >  2:5361269/1‑101 (MQ=255)

                     gCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaa                                                                            <  1:5360854/101‑1 (MQ=255)

                     gCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaa                                                                            <  1:5360615/101‑1 (MQ=255)

                     gCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaa                                                                            >  2:5361273/1‑101 (MQ=255)

                      cTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACCCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaaa                                                                           <  2:5360380/101‑1 (MQ=255)

                       tAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaaaa                                                                          >  2:5361281/1‑101 (MQ=255)

                       tAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaaaa                                                                          >  1:5361279/1‑101 (MQ=255)

                        aaTTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaaaaa                                                                         <  2:5360586/101‑1 (MQ=255)

                          ttCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAAcc                                                                       <  2:5360720/101‑1 (MQ=255)

                            cTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGa                                                                     >  2:5361284/1‑101 (MQ=255)

                              tGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACg                                                                   <  2:5361205/101‑1 (MQ=255)

                               gCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGc                                                                  >  2:5361287/1‑101 (MQ=255)

                                  aTGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCaaa                                                               >  2:5361293/1‑101 (MQ=255)

                                  aTGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCaaa                                                               >  1:5361294/1‑101 (MQ=255)

                                  aTGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCaaa                                                               >  1:5361297/1‑101 (MQ=255)

                                    gTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGt                                                             >  1:5361303/1‑101 (MQ=255)

                                    gTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGt                                                             >  2:5361302/1‑101 (MQ=255)

                                         ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtt                                                        >  1:5361307/1‑101 (MQ=255)

                                         ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtt                                                        <  2:5360735/101‑1 (MQ=255)

                                          cACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt                                                       >  1:5361312/1‑101 (MQ=255)

                                           aCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg                                                           <  1:5360670/96‑1 (MQ=255)

                                             tGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtttttt                                                    >  1:5361315/1‑101 (MQ=255)

                                              ggCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttttt                                                   >  1:5361319/1‑101 (MQ=255)

                                              ggCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttttt                                                   >  2:5361318/1‑101 (MQ=255)

                                               gCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTa                                                  >  1:5361324/1‑101 (MQ=255)

                                               gCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTa                                                  <  2:5360691/101‑1 (MQ=255)

                                                cTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc                                                 <  1:5361036/101‑1 (MQ=255)

                                                cTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc                                                 >  2:5361325/1‑101 (MQ=255)

                                                 tAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACg                                                >  2:5361329/1‑101 (MQ=255)

                                                   aTAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTc                                              >  2:5361333/1‑101 (MQ=255)

                                                     aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCt                                            >  1:5361336/1‑101 (MQ=255)

                                                     aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCt                                            >  2:5361337/1‑101 (MQ=255)

                                                        aTTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtttt                                                      <  2:5360678/88‑1 (MQ=255)

                                                         ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAtt                                        <  1:5360557/101‑1 (MQ=255)

                                                          tGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc                                       <  1:5360702/101‑1 (MQ=255)

                                                          tGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTc                                       >  2:5361343/1‑101 (MQ=255)

                                                           gAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa                                      <  1:5360658/101‑1 (MQ=255)

                                                           gAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa                                      <  1:5361010/101‑1 (MQ=255)

                                                           gAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCa                                      >  1:5361345/1‑101 (MQ=255)

                                                             gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGa                                    <  1:5360756/101‑1 (MQ=255)

                                                             gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGa                                    >  1:5361348/1‑101 (MQ=255)

                                                               tGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                  <  1:5360963/101‑1 (MQ=255)

                                                               tGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                  >  1:5361352/1‑101 (MQ=255)

                                                               tGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                  <  2:5360830/101‑1 (MQ=255)

                                                                gTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                  >  2:5361355/1‑100 (MQ=255)

                                                                 ttAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcctc                                <  2:5360791/101‑1 (MQ=255)

                                                                  tAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcctcc                               >  1:5361362/1‑101 (MQ=255)

                                                                  tAGATAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcctcc                               >  1:5361357/1‑101 (MQ=255)

                                                                      tAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTc                           <  1:5361096/101‑1 (MQ=255)

                                                                      tAAGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTc                           <  2:5360810/101‑1 (MQ=255)

                                                                       aaGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCa                          >  1:5361365/1‑101 (MQ=255)

                                                                       aaGAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCa                          <  2:5360891/101‑1 (MQ=255)

                                                                         gAACTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCaaa                        >  2:5361368/1‑101 (MQ=255)

                                                                          agctctctCCCTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt                                               <  1:5360422/75‑1 (MQ=14)

                                                                          aaCTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAt                       <  2:5360950/101‑1 (MQ=255)

                                                                           aCTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATg                      >  1:5361372/1‑101 (MQ=255)

                                                                           aCTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATg                      <  1:5360690/101‑1 (MQ=255)

                                                                           aCTCTCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATg                      >  2:5361373/1‑101 (MQ=255)

                                                                            ctctctCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCttt                            <  1:5360647/94‑1 (MQ=255)

                                                                               tctcACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATa                  >  2:5361379/1‑101 (MQ=255)

                                                                               tctcACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATa                  >  1:5361378/1‑101 (MQ=255)

                                                                               tctcACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATa                  <  2:5360739/101‑1 (MQ=255)

                                                                                 tcACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTa                                                  <  1:5360799/67‑1 (MQ=25)

                                                                                 tcACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGc                >  2:5361383/1‑101 (MQ=255)

                                                                                  cACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcct                                 <  2:5360650/83‑1 (MQ=255)

                                                                                  cACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGcc               >  1:5361387/1‑101 (MQ=255)

                                                                                   aCTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCa              <  2:5360867/101‑1 (MQ=255)

                                                                                    cTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCa                          <  2:5360905/88‑1 (MQ=255)

                                                                                    cTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCaa             >  1:5361390/1‑101 (MQ=255)

                                                                                    cTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCaa             <  2:5360747/101‑1 (MQ=255)

                                                                                    cTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCaa             >  2:5361391/1‑101 (MQ=255)

                                                                                       cagccagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTc          >  1:5361395/1‑101 (MQ=255)

                                                                                       cagccagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTc          <  1:5360953/101‑1 (MQ=255)

                                                                                        agccagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCGGACCTCCTTTCAAATGAATAGCCAACTCa         <  1:5360887/101‑1 (MQ=255)

                                                                                        agccagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCa         <  1:5360903/101‑1 (MQ=255)

                                                                                        agccagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCa         <  2:5360851/101‑1 (MQ=255)

                                                                                          ccagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaa       <  2:5360933/101‑1 (MQ=255)

                                                                                          ccagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaa       >  2:5361399/1‑101 (MQ=255)

                                                                                           cagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaaa      <  1:5360840/101‑1 (MQ=255)

                                                                                           cagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaaa      >  2:5361402/1‑101 (MQ=255)

                                                                                           cagAGCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaaa      >  1:5361403/1‑101 (MQ=255)

                                                                                            agagCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAt                       >  2:5361406/1‑83 (MQ=255)

                                                                                             gagCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAAtt    <  2:5360857/101‑1 (MQ=255)

                                                                                             gagCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAAtt    <  2:5360819/101‑1 (MQ=255)

                                                                                              agCCGCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTc   <  2:5360713/101‑1 (MQ=255)

                                                                                               gccgccAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTca  <  2:5361127/101‑1 (MQ=255)

                                                                                               gccgccAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTca  <  2:5360753/101‑1 (MQ=255)

CCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCA  >  NC_000913/3648229‑3648424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`