Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,163,201 T→C V109A (GTG→GCG)  baeS → sensory histidine kinase BaeS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,163,2010TC99.8% 2337.6 / NA 552V109A (GTG→GCG) baeSsensory histidine kinase BaeS
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (283/268);  minor base G (1/0);  total (284/268)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 570 total aligned reads displayed.

CTTTGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGTGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAGTTGGC  >  NC_000913/2163103‑2163298
                                                                                                  |                                                                                                 
 tttGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGggcggt                                                                                                >  2:3287844/1‑101 (MQ=255)
  ttGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGtt                                                                                               >  1:3287851/1‑101 (MQ=255)
    gTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGa                                                                                             <  2:3286795/101‑1 (MQ=255)
     tCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGAt                                                                                            >  2:3287860/1‑101 (MQ=255)
      cTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATc                                                                                           >  1:3287861/1‑101 (MQ=255)
       tttCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCa                                                                                          <  2:3286613/101‑1 (MQ=255)
         tCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCaaa                                                                                        >  2:3287873/1‑101 (MQ=255)
          cAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCaa                                                                                         <  1:3287868/99‑1 (MQ=255)
           aGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAaac                                                                                      <  1:3286538/101‑1 (MQ=255)
            gATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAaaca                                                                                     >  2:3287882/1‑101 (MQ=255)
            gATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAaaca                                                                                     >  1:3287881/1‑101 (MQ=255)
              tCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAaacaac                                                                                   >  1:3287892/1‑101 (MQ=255)
               ccTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAacaaca                                                                                  >  2:3287897/1‑101 (MQ=255)
               ccTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAacaaca                                                                                  <  1:3286747/101‑1 (MQ=255)
                cTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAAcaacaa                                                                                 <  2:3286432/101‑1 (MQ=255)
                 tGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACaaa                                                                                >  2:3287905/1‑101 (MQ=255)
                    gTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTg                                                                             >  1:3287910/1‑101 (MQ=255)
                     ttCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGc                                                                            <  2:3287197/101‑1 (MQ=255)
                      tCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACaaa                                                                                >  2:3287922/1‑96 (MQ=255)
                      tCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCt                                                                           >  1:3287920/1‑101 (MQ=255)
                       cATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtg                                                                          <  1:3286958/101‑1 (MQ=255)
                       cATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtg                                                                          <  1:3286891/101‑1 (MQ=255)
                          ttGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggtt                                                                       <  1:3287101/101‑1 (MQ=255)
                          ttGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggtt                                                                       <  1:3286471/101‑1 (MQ=255)
                          ttGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggtt                                                                       >  1:3287931/1‑101 (MQ=255)
                           tGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggttg                                                                      <  2:3287039/101‑1 (MQ=255)
                           tGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggttg                                                                      <  2:3287092/101‑1 (MQ=255)
                            gAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggttgg                                                                     <  2:3286857/101‑1 (MQ=255)
                             aaCACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggttggt                                                                    >  2:3287938/1‑101 (MQ=255)
                              acacGATAATTCGGAAGATAAACGCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTg                                                                                              >  2:3287946/1‑74 (MQ=255)
                               cacGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTcc                                                                  >  1:3287948/1‑101 (MQ=255)
                                acGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCcg                                                                 <  1:3287013/101‑1 (MQ=255)
                                  gATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggttg                                                                      >  2:3287959/1‑94 (MQ=255)
                                  gATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCcgcg                                                               <  1:3286402/101‑1 (MQ=255)
                                   aTAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAgag                                                                             >  1:3287963/1‑84 (MQ=255)
                                    tAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAg                                                             <  2:3286984/101‑1 (MQ=255)
                                     aaTTCGGAAGATAACCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtggt                                                                        <  2:3286834/89‑1 (MQ=255)
                                     aaTTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAgc                                                            >  1:3287969/1‑101 (MQ=255)
                                     aaTTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAgc                                                            <  2:3286898/101‑1 (MQ=255)
                                      aTTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCcg                                                                 >  2:3287974/1‑95 (MQ=255)
                                         cGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtgg                                                                         <  1:3286248/84‑1 (MQ=255)
                                         cGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCt                                                                           >  2:3287983/1‑82 (MQ=255)
                                         cGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGa                                                              >  1:3287982/1‑95 (MQ=255)
                                         cGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCg                                                        <  1:3286711/101‑1 (MQ=255)
                                          ggAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGa                                                       <  2:3287407/101‑1 (MQ=255)
                                            aaGATAACCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGAt                                                      <  2:3287341/100‑1 (MQ=255)
                                            aaGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCtgg                                                                         >  2:3287992/1‑81 (MQ=255)
                                            aaGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGAtt                                                     <  2:3286964/101‑1 (MQ=255)
                                             aGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTc                                                    >  1:3287997/1‑101 (MQ=255)
                                               aTAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCa                                                  <  2:3287782/101‑1 (MQ=255)
                                                tAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCAc                                                 >  2:3288003/1‑101 (MQ=255)
                                                 aaccccggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGa                                                              <  2:3287517/84‑1 (MQ=255)
                                                 aaaCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCAcc                                                <  1:3286782/101‑1 (MQ=255)
                                                 aaaCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCAcc                                                >  1:3288010/1‑101 (MQ=255)
                                                   aCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTg                                              >  2:3288019/1‑101 (MQ=255)
                                                   aCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTg                                              <  1:3287839/101‑1 (MQ=255)
                                                   aCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTg                                              >  1:3288020/1‑101 (MQ=255)
                                                    cccggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGa                                                                                             <  2:3286531/53‑1 (MQ=255)
                                                    cccggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCcg                                                                 <  2:3286739/81‑1 (MQ=255)
                                                     ccggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCaa                                                                                         <  1:3288035/56‑1 (MQ=255)
                                                     ccggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCg                                                        <  1:3287273/89‑1 (MQ=255)
                                                     ccggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGAc                                            <  2:3286770/101‑1 (MQ=255)
                                                     ccggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGAc                                            >  2:3288029/1‑101 (MQ=255)
                                                      cggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACg                                           <  1:3286987/101‑1 (MQ=255)
                                                       ggcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACgg                                          >  2:3288040/1‑101 (MQ=255)
                                                        gcccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGt                                         <  1:3286925/101‑1 (MQ=255)
                                                         cccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTa                                        >  1:3288045/1‑101 (MQ=255)
                                                          ccggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTac                                       >  2:3288053/1‑101 (MQ=255)
                                                           cggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTaca                                      <  2:3287219/101‑1 (MQ=255)
                                                           cggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTaca                                      <  1:3287118/101‑1 (MQ=255)
                                                           cggGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTaca                                      >  1:3288056/1‑101 (MQ=255)
                                                            gggTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTacac                                     <  1:3286076/101‑1 (MQ=255)
                                                             ggTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACg                                    >  2:3288062/1‑101 (MQ=255)
                                                                 tGCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGa                                >  1:3288070/1‑101 (MQ=255)
                                                                  gCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGAt                                                      <  1:3287343/78‑1 (MQ=255)
                                                                  gCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGAc                               >  2:3288075/1‑101 (MQ=255)
                                                                  gCCACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGAc                               <  2:3286289/101‑1 (MQ=255)
                                                                   ccACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGAcc                              <  2:3287166/101‑1 (MQ=255)
                                                                    cACCGCACGGCTGGCGTACCCAGTTCTGGGCGGTTg                                                                                              >  2:3288083/1‑36 (MQ=255)
                                                                     aCCGCACGGCTGGCGTACCCAGTTCTTGGCGGTTGAt                                                                                            >  1:3288086/1‑37 (MQ=255)
                                                                        gCACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTc                         >  2:3288091/1‑101 (MQ=255)
                                                                         cACGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCTACCCATTCt                        <  1:3286636/101‑1 (MQ=255)
                                                                           cGGCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTgg                      >  1:3288099/1‑101 (MQ=255)
                                                                            ggCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTg                                                                             <  2:3286921/45‑1 (MQ=255)
                                                                            ggCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTg                       <  1:3287077/99‑1 (MQ=255)
                                                                             gCTGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTc                    >  2:3288104/1‑101 (MQ=255)
                                                                               tGGCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCaa                  >  1:3288109/1‑101 (MQ=255)
                                                                               tGGCGTACCCAGTTCTGGGCGGCTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTaca                                      >  2:3288112/1‑81 (MQ=255)
                                                                                ggCGTACCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTc                                                                   <  2:3286649/51‑1 (MQ=255)
                                                                                     aCCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGc            <  2:3286875/101‑1 (MQ=255)
                                                                                     aCCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGc            >  1:3288122/1‑101 (MQ=255)
                                                                                     aCCCAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGc            <  2:3287051/101‑1 (MQ=255)
                                                                                      cccAGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCg           >  2:3288125/1‑101 (MQ=255)
                                                                                         aGTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGaa        <  1:3287172/101‑1 (MQ=255)
                                                                                          gTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAg       >  2:3288136/1‑101 (MQ=255)
                                                                                          gTTCTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAg       >  1:3288135/1‑101 (MQ=255)
                                                                                             cTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAGTTg    >  1:3288144/1‑101 (MQ=255)
                                                                                             cTGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAGTTg    <  2:3287258/101‑1 (MQ=255)
                                                                                              tGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAGTTgg   <  1:3286844/101‑1 (MQ=255)
                                                                                              tGGGCGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAGTTgg   <  1:3287023/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
CTTTGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGTGGTTGATCAAAACAACAAAGTGCTGGTTGGTCCGCGAGCGCCGATTCCACCTGACGGTACACGGCGACCCATTCTGGTCAACGGTGCGGAAGTTGGC  >  NC_000913/2163103‑2163298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: