BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,596,391	(A)_5→6	coding (13/927 nt)	livH ←	branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,596,386	1	.	A	100.0%	1170.0 / NA	264	L6F (TTG→TTT)	livH	branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (143/121); total (143/121)

Only 100 of 302 total aligned reads displayed.

TGATCATGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑AAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGC  >  NC_000913/3596286‑3596480

tGATCATGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAc                                                                                                 >  1:5510996/1‑101 (MQ=255)

  aTCATGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aa                                                                                              >  2:5510998/1‑101 (MQ=255)

   tCATGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaa                                                                                             >  1:5511002/1‑101 (MQ=255)

    cATGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaa                                                                                            >  1:5511005/1‑101 (MQ=255)

     aTGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaa                                                                                           <  2:5510405/101‑1 (MQ=255)

     aTGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGCACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaa                                                                                           >  2:5511007/1‑101 (MQ=255)

        ccGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaaact                                                                                        <  1:5510063/101‑4 (MQ=255)

         cGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaaactg                                                                                       >  2:5511011/1‑97 (MQ=255)

         cGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaaactg                                                                                       <  1:5510586/101‑5 (MQ=255)

          gATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaaactgc                                                                                      <  1:5510538/101‑6 (MQ=255)

          gATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaaactgc                                                                                      >  1:5511016/1‑96 (MQ=255)

          gATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑aaaaaactgc                                                                                      >  2:5511015/1‑96 (MQ=255)

           aTAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCt                                                                                      <  2:5510532/101‑1 (MQ=255)

            tAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTc                                                                                     <  1:5510605/101‑1 (MQ=255)

             aaTGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCa                                                                                    >  1:5511019/1‑101 (MQ=255)

             aaTGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCa                                                                                    <  1:5510355/101‑1 (MQ=255)

              aTGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAg                                                                                   >  1:5511023/1‑101 (MQ=255)

              aTGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAg                                                                                   <  1:5510736/101‑1 (MQ=255)

                gCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGAc                                                                                 <  2:5510238/101‑1 (MQ=255)

                gCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGAc                                                                                 <  1:5510686/101‑1 (MQ=255)

                gCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGAc                                                                                 <  1:5510420/101‑1 (MQ=255)

                 ccGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACa                                                                                <  2:5510620/101‑1 (MQ=255)

                 ccGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACa                                                                                >  2:5511025/1‑101 (MQ=255)

                  cGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACAt                                                                               <  2:5510574/101‑1 (MQ=255)

                   gTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATa                                                                              <  2:5510508/101‑1 (MQ=255)

                   gTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATa                                                                              <  1:5510438/101‑1 (MQ=255)

                    tAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATaa                                                                             <  1:5510593/101‑1 (MQ=255)

                    tAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATaa                                                                             >  1:5511028/1‑101 (MQ=255)

                    tAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATaa                                                                             <  2:5510461/101‑1 (MQ=255)

                     aaaCCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAg                                                                            <  2:5510336/101‑1 (MQ=255)

                     aaaCCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAg                                                                            <  2:5510500/101‑1 (MQ=255)

                     aaaCCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAg                                                                            <  2:5510550/101‑1 (MQ=255)

                      aaCCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAgg                                                                           >  2:5511033/1‑101 (MQ=255)

                       aCCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGt                                                                          >  1:5511034/1‑101 (MQ=255)

                         cATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTaa                                                                        <  2:5510390/101‑1 (MQ=255)

                         cATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTaa                                                                        >  1:5511038/1‑101 (MQ=255)

                         cATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTaa                                                                        <  2:5510875/101‑1 (MQ=255)

                           tGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAAcc                                                                      <  1:5510769/101‑1 (MQ=255)

                            ggTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCt                                                                     >  2:5511041/1‑101 (MQ=255)

                              tgtAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCttt                                                                   <  1:5510491/101‑1 (MQ=255)

                              tgtAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCttt                                                                   <  2:5510521/101‑1 (MQ=255)

                               gtAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTc                                                                  <  2:5510595/101‑1 (MQ=255)

                                tAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCt                                                                 <  1:5510642/101‑1 (MQ=255)

                                gaGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCt                                                                 >  1:5511044/2‑101 (MQ=255)

                                 aGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTa                                                                <  2:5510738/101‑1 (MQ=255)

                                  gCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTaa                                                               <  2:5510667/101‑1 (MQ=255)

                                   ccGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTaaa                                                              >  1:5511048/1‑101 (MQ=255)

                                   ccGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTaaa                                                              >  2:5511049/1‑101 (MQ=255)

                                    cGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAc                                                             >  1:5511052/1‑101 (MQ=255)

                                    cGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAc                                                             <  2:5510703/101‑1 (MQ=255)

                                     gATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcc                                                            >  2:5511057/1‑101 (MQ=255)

                                     gATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcc                                                            <  1:5510560/101‑1 (MQ=255)

                                      aTGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAccc                                                           <  2:5510615/101‑1 (MQ=255)

                                       tGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcccg                                                          <  1:5510478/101‑1 (MQ=255)

                                       tGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcccg                                                          <  1:5510333/101‑1 (MQ=255)

                                       tGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAc                                                             >  1:5511059/1‑98 (MQ=255)

                                          cTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcccgccc                                                       <  2:5510808/101‑1 (MQ=255)

                                           tATCCGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcccgcccg                                                      >  2:5511063/1‑101 (MQ=255)

                                           tATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcccgcccg                                                      >  1:5511064/1‑101 (MQ=255)

                                               aGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCAtt                                                  <  1:5510664/101‑1 (MQ=255)

                                               aGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCAtt                                                  >  1:5511068/1‑101 (MQ=255)

                                                   cgTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTAc                                              <  1:5510385/101‑1 (MQ=255)

                                                    gTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACg                                             >  1:5511077/1‑101 (MQ=255)

                                                    gTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACg                                             >  2:5511075/1‑101 (MQ=255)

                                                      aGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACggg                                           >  1:5511081/1‑101 (MQ=255)

                                                          aCTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGt                                       >  1:5511085/1‑101 (MQ=255)

                                                          aCTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGt                                       <  2:5510634/101‑1 (MQ=255)

                                                            tGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTgg                                     >  2:5511087/1‑101 (MQ=255)

                                                              cccAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGga                                   >  1:5511089/1‑101 (MQ=255)

                                                                 aGCGTGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGgatga                                >  1:5511093/1‑101 (MQ=255)

                                                                     tGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACgg                                            <  2:5510563/85‑1 (MQ=255)

                                                                     tGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCAc                            >  1:5511098/1‑101 (MQ=255)

                                                                     tGACGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCAc                            >  2:5511097/1‑101 (MQ=255)

                                                                       aCGCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACtt                          >  1:5511103/1‑101 (MQ=255)

                                                                         gCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTgg                        >  2:5511106/1‑101 (MQ=255)

                                                                         gCCGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTgg                        <  2:5510721/101‑1 (MQ=255)

                                                                          ccGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGc                       >  1:5511107/1‑101 (MQ=255)

                                                                           cGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcc                                                            >  2:5511114/1‑63 (MQ=255)

                                                                           cGTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCt                      >  1:5511112/1‑101 (MQ=255)

                                                                            gTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTg                     <  2:5510650/101‑1 (MQ=255)

                                                                            gTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTg                     <  1:5511072/101‑1 (MQ=255)

                                                                            gTTAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTg                     >  1:5511116/1‑101 (MQ=255)

                                                                             ttAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGc                    >  1:5511119/1‑101 (MQ=255)

                                                                              tAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAAcccgc                                                         <  2:5510675/63‑1 (MQ=255)

                                                                              tAAACATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGcc                   >  2:5511124/1‑101 (MQ=255)

                                                                                aaCATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGt                 >  2:5511127/1‑101 (MQ=255)

                                                                                 aCATCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTgg                                     >  1:5511130/1‑80 (MQ=255)

                                                                                  cATCTGCTGCAAGAAATACAAAAAACTGCTCAGACa                                                                                >  2:5511132/1‑36 (MQ=255)

                                                                                    tCTGCTGCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGAt             >  1:5511134/1‑101 (MQ=255)

                                                                                     ctgctgCAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTgg               >  1:5511137/1‑98 (MQ=255)

                                                                                        ctgcAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAAc         >  2:5511143/1‑101 (MQ=255)

                                                                                         tgcAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAAcc        >  1:5511144/1‑101 (MQ=255)

                                                                                         tgcAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAAcc        <  2:5510753/101‑1 (MQ=255)

                                                                                           cAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGt      >  2:5511147/1‑101 (MQ=255)

                                                                                           cAAGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGt      >  2:5511150/1‑101 (MQ=255)

                                                                                            aaGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTc     >  1:5511155/1‑101 (MQ=255)

                                                                                             aGAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCg    >  2:5511157/1‑101 (MQ=255)

                                                                                              gAAATACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCgg   <  2:5510946/101‑1 (MQ=255)

                                                                                               aaaTACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGc  <  1:5510579/101‑1 (MQ=255)

                                                                                               aaaTACAAAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGc  <  1:5510518/101‑1 (MQ=255)

TGATCATGCCGATAATGCCGTAAACCATGGTGTAGCCGATGGCTATCAGCGCGTAGGTACTGCCCAGCGTGACGCCGTTAAACATCTGCTGCAAGAAATAC‑AAAAACTGCTCAGACATAAGGTAACCTTTCTAAACCCGCCCGCATTTTACGGGCGGTGGGATGATCACTTGGCTGCCGTGGATGAACCGTCGGC  >  NC_000913/3596286‑3596480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`