BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,891,806	T→C	R64R (CGT→CGC)	mdtL →	efflux pump MdtL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,891,806	0	T	C	100.0%	1255.8 / NA	301	R64R (CGT→CGC)	mdtL	efflux pump MdtL
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (145/156); total (145/156)

Only 100 of 301 total aligned reads displayed.

GATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTCTTGCAG  >  NC_000913/3891708‑3891903

gATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGGAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTc                                                                                                 <  2:6004201/101‑1 (MQ=255)

gATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGAAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTc                                                                                                 >  2:6004940/1‑101 (MQ=255)

  tctcAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAg                                                                                               >  2:6004943/1‑101 (MQ=255)

  tctcAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAg                                                                                               <  1:6004493/101‑1 (MQ=255)

     cAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGga                                                                                            >  1:6004944/1‑101 (MQ=255)

     cAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGga                                                                                            <  1:6004482/101‑1 (MQ=255)

      aaTGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGgag                                                                                           <  1:6004400/101‑1 (MQ=255)

       aTGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGgaga                                                                                          <  2:6004410/101‑1 (MQ=255)

        tGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGaa                                                                                         >  1:6004947/1‑101 (MQ=255)

        tGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGaa                                                                                         <  2:6004597/101‑1 (MQ=255)

         gCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGaaa                                                                                        <  2:6004417/101‑1 (MQ=255)

            aGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGcc                                                                                     <  1:6004276/101‑1 (MQ=255)

            aGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGcc                                                                                     >  1:6004953/1‑101 (MQ=255)

            aGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGcc                                                                                     <  2:6004500/101‑1 (MQ=255)

            aGCCAAGCGCAGTTGCATTTTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGcc                                                                                     >  2:6004952/1‑101 (MQ=255)

              cGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCgg                                                                                   <  1:6004413/101‑1 (MQ=255)

               gAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGt                                                                                  >  1:6004958/1‑101 (MQ=255)

                aaGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTc                                                                                 >  2:6004960/1‑101 (MQ=255)

                aaGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTc                                                                                 <  1:6004604/101‑1 (MQ=255)

                aaGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTc                                                                                 >  2:6004964/1‑101 (MQ=255)

                   cgcAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGcc                                                                              <  1:6004475/101‑1 (MQ=255)

                    gcAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCa                                                                             >  2:6004970/1‑101 (MQ=255)

                    gcAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCa                                                                             >  1:6004969/1‑101 (MQ=255)

                      aGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATa                                                                           <  2:6004578/101‑1 (MQ=255)

                      aGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATa                                                                           >  1:6004975/1‑101 (MQ=255)

                       gTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATAc                                                                          >  1:6004978/1‑101 (MQ=255)

                        ttGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATAcc                                                                         <  2:6004681/101‑1 (MQ=255)

                        ttGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATAcc                                                                         >  2:6004980/1‑101 (MQ=255)

                         tGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATAccc                                                                        <  2:6004513/101‑1 (MQ=255)

                         tGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATAccc                                                                        >  2:6004983/1‑101 (MQ=255)

                         tGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATAccc                                                                        <  2:6004486/101‑1 (MQ=255)

                          gCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcg                                                                       <  2:6004474/101‑1 (MQ=255)

                           cATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCg                                                                                    >  2:6004986/1‑87 (MQ=255)

                            atatTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggc                                                                     <  2:6004355/101‑1 (MQ=255)

                             tatTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcg                                                                    >  1:6004989/1‑101 (MQ=255)

                              atTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcgc                                                                   >  2:6004990/1‑101 (MQ=255)

                                 gCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggc                                                                >  2:6004993/1‑101 (MQ=255)

                                 gCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggc                                                                <  1:6004379/101‑1 (MQ=255)

                                  cGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggcg                                                               <  2:6004876/101‑1 (MQ=255)

                                     tctcCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcgcgg                                                                 >  2:6004998/1‑96 (MQ=255)

                                       tcCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGTAGAAAGCCGGTCGCCATACCCGGCGCGGCGCtatt                                                          <  2:6004581/101‑1 (MQ=255)

                                       tcCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCggcgcggcgc                                                              >  1:6005001/1‑97 (MQ=255)

                                         cGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcgcgg                                                                 >  2:6005003/1‑92 (MQ=255)

                                         cGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCtattta                                                        <  2:6004738/101‑1 (MQ=255)

                                         cGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCtattta                                                        <  2:6004654/101‑1 (MQ=255)

                                             tatCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTtattat                                                    >  2:6005008/1‑101 (MQ=255)

                                              atCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTattatt                                                   <  1:6004573/101‑1 (MQ=255)

                                              atCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTattatt                                                   >  1:6005010/1‑101 (MQ=255)

                                               tCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTg                                                  <  1:6004546/101‑1 (MQ=255)

                                                 tGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGcc                                                >  2:6005015/1‑101 (MQ=255)

                                                  ggCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCt                                               <  1:6004652/101‑1 (MQ=255)

                                                  ggCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCt                                               <  2:6004571/101‑1 (MQ=255)

                                                    cGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCg                                             >  1:6005021/1‑101 (MQ=255)

                                                    cGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCg                                             >  1:6005018/1‑101 (MQ=255)

                                                     ggggATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCgg                                            <  2:6004374/101‑1 (MQ=255)

                                                     ggggATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCgg                                            >  2:6005022/1‑101 (MQ=255)

                                                     ggggATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCgg                                            <  2:6004555/101‑1 (MQ=255)

                                                      gggATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGgt                                           >  1:6005026/1‑101 (MQ=255)

                                                       ggATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGgtg                                          <  2:6004797/101‑1 (MQ=255)

                                                       ggATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGgtg                                          >  2:6005028/1‑101 (MQ=255)

                                                         aTGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCgg                                            >  2:6005033/1‑97 (MQ=255)

                                                         aTGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgtt                                        <  1:6004353/101‑1 (MQ=255)

                                                           ggCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgttct                                      >  1:6005034/1‑101 (MQ=255)

                                                             cAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgttctgt                                    >  1:6005038/1‑101 (MQ=255)

                                                              aGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgttctgtt                                   <  2:6004431/101‑1 (MQ=255)

                                                              aGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgttctgtt                                   >  2:6005041/1‑101 (MQ=255)

                                                              aGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgttctgtt                                   <  2:6004492/101‑1 (MQ=255)

                                                              aGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgttctgtt                                   >  1:6005044/1‑101 (MQ=255)

                                                                 tGCGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCAc                                >  2:6005048/1‑101 (MQ=255)

                                                                   cGATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTg                              <  1:6004466/101‑1 (MQ=255)

                                                                    gATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTgg                             <  2:6004523/101‑1 (MQ=255)

                                                                    gATGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTgg                             >  1:6005050/1‑101 (MQ=255)

                                                                     aTGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGc                            <  1:6004504/101‑1 (MQ=255)

                                                                      tGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCt                           >  1:6005055/1‑101 (MQ=255)

                                                                      tGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCt                           >  2:6005053/1‑101 (MQ=255)

                                                                      tGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCt                           <  2:6004440/101‑1 (MQ=255)

                                                                      tGTTATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCt                           <  2:6004457/101‑1 (MQ=255)

                                                                        ttATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGtgttctgtt                                   <  2:6004607/91‑1 (MQ=255)

                                                                         tATTTGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGaa                        >  2:6005058/1‑101 (MQ=255)

                                                                           tttGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAAc                      <  2:6004316/101‑1 (MQ=255)

                                                                             tGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCa                    >  2:6005062/1‑101 (MQ=255)

                                                                             tGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCa                    <  1:6004441/101‑1 (MQ=255)

                                                                             tGCCGGTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCa                    >  2:6005065/1‑101 (MQ=255)

                                                                                 ggTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcgcggc                                                                <  1:6004447/53‑1 (MQ=255)

                                                                                 ggTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCAc                >  1:6005068/1‑101 (MQ=255)

                                                                                 ggTAAAGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCAc                >  2:6005070/1‑101 (MQ=255)

                                                                                     aaGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCcggcg                                                                    >  2:6005076/1‑45 (MQ=255)

                                                                                     aaGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTa            >  1:6005075/1‑101 (MQ=255)

                                                                                      aGTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTAt           <  2:6004518/101‑1 (MQ=255)

                                                                                       gTGGCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTAtt          <  1:6004739/101‑1 (MQ=255)

                                                                                         ggCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTc        <  1:6004683/101‑1 (MQ=255)

                                                                                         ggCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTc        <  1:6004512/101‑1 (MQ=255)

                                                                                         ggCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTc        <  2:6004714/101‑1 (MQ=255)

                                                                                          gCCGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTCt       >  1:6005080/1‑101 (MQ=255)

                                                                                            cGATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTAttt         <  2:6004531/97‑1 (MQ=255)

                                                                                             gATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTtattat                                                    <  1:6004866/53‑1 (MQ=255)

                                                                                             gATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTCTTGc    <  1:6004534/101‑1 (MQ=255)

                                                                                             gATCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTCTTGc    >  1:6005083/1‑101 (MQ=255)

                                                                                              aTCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTCTTGCa   <  2:6004830/101‑1 (MQ=255)

                                                                                               tCGCTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTCTTGCAg  <  1:6004710/101‑1 (MQ=255)

GATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATATCTGGCGGGGATGGCAGCTGCGATGTTATTTGCCGGTAAAGTGGCCGATCGTTCAGGGAGAAAGCCGGTCGCCATACCCGGCGCGGCGCTATTTATTATTGCCTCGGTGTTCTGTTCACTGGCTGAAACCAGCACGTTATTTCTTGCAG  >  NC_000913/3891708‑3891903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`