BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,401,818	A→G	C505C (TGT→TGC)	csrD ←	regulator of CsrB and CsrC decay

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,401,818	0	A	G	100.0%	1275.1 / NA	304	C505C (TGT→TGC)	csrD	regulator of CsrB and CsrC decay
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (166/138); total (166/138)

Only 100 of 307 total aligned reads displayed.

GCATTCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCACATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAGTAAC  >  NC_000913/3401720‑3401915

 cATTCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCAt                                                                                                >  1:5202672/1‑101 (MQ=255)

 cATTCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCAt                                                                                                >  2:5202676/1‑101 (MQ=255)

  aTTCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCAtt                                                                                               <  1:5202162/101‑1 (MQ=255)

   ttCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTg                                                                                              <  2:5202102/101‑1 (MQ=255)

   ttCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTg                                                                                              >  2:5202679/1‑101 (MQ=255)

    tCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCAt                                                                                                <  1:5202279/98‑1 (MQ=255)

    tCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGc                                                                                             >  1:5202681/1‑101 (MQ=255)

    tCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGc                                                                                             >  2:5202683/1‑101 (MQ=255)

     cACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCa                                                                                            <  2:5202307/101‑1 (MQ=255)

     cACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCa                                                                                            <  2:5202239/101‑1 (MQ=255)

       cTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCgcattgcatt                                                                                          <  2:5202380/101‑1 (MQ=255)

        tAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTa                                                                                         >  1:5202688/1‑101 (MQ=255)

         aaaCGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTaa                                                                                        <  1:5202232/101‑1 (MQ=255)

         aaaCGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTaa                                                                                        <  1:5202331/101‑1 (MQ=255)

         aaaCGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTaa                                                                                        <  2:5202214/101‑1 (MQ=255)

         aaaCGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTaa                                                                                        <  2:5202066/101‑1 (MQ=255)

         aaaCGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTaa                                                                                        <  2:5202328/101‑1 (MQ=255)

          aaCGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAAc                                                                                       <  2:5202256/101‑1 (MQ=255)

           aCGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACg                                                                                      >  2:5202692/1‑101 (MQ=255)

            cGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGt                                                                                     <  1:5202385/101‑1 (MQ=255)

             gAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTa                                                                                    >  1:5202695/1‑101 (MQ=255)

             gAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTa                                                                                    >  1:5202698/1‑101 (MQ=255)

             gAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTa                                                                                    <  1:5202252/101‑1 (MQ=255)

              aaTAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTAt                                                                                   <  2:5202348/101‑1 (MQ=255)

              aaTAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTAt                                                                                   >  2:5202701/1‑101 (MQ=255)

               aTAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATc                                                                                  >  2:5202705/1‑101 (MQ=255)

               aTAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATc                                                                                  >  2:5202708/1‑101 (MQ=255)

                  aCAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATcgcg                                                                               >  1:5202710/1‑101 (MQ=255)

                   cAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCgcgc                                                                              <  1:5202309/101‑1 (MQ=255)

                    aGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCa                                                                             >  2:5202714/1‑101 (MQ=255)

                      gTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGc                                                                           >  1:5202717/1‑101 (MQ=255)

                        tGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCa                                                                         <  1:5202057/101‑1 (MQ=255)

                        tGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCa                                                                         <  2:5202299/101‑1 (MQ=255)

                         gTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCaa                                                                        <  2:5202210/101‑1 (MQ=255)

                           aaaCGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACg                                                                      <  2:5202274/101‑1 (MQ=255)

                            aaCGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGc                                                                     >  1:5202722/1‑101 (MQ=255)

                             aCGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCt                                                                    >  2:5202723/1‑101 (MQ=255)

                               gACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGa                                                                  <  2:5202365/101‑1 (MQ=255)

                                 cTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGaaa                                                                <  1:5202205/101‑1 (MQ=255)

                                  tGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTAt                                                                                   >  2:5202731/1‑81 (MQ=255)

                                  tGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGaaaa                                                               <  2:5201982/101‑1 (MQ=255)

                                  tGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGaaaa                                                               >  2:5202727/1‑101 (MQ=255)

                                   gATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAAc                                                              <  1:5202469/101‑1 (MQ=255)

                                    atatGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAAcg                                                             >  1:5202732/1‑101 (MQ=255)

                                      atGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAAcgcg                                                           >  1:5202739/1‑101 (MQ=255)

                                      atGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAAcgcg                                                           >  2:5202738/1‑101 (MQ=255)

                                        gTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCggg                                                         <  2:5202520/101‑1 (MQ=255)

                                        gTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCggg                                                         <  2:5202168/101‑1 (MQ=255)

                                         ttGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGc                                                        >  1:5202743/1‑101 (MQ=255)

                                           gACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGa                                                      <  1:5201880/101‑1 (MQ=255)

                                           gACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGa                                                      >  2:5202745/1‑101 (MQ=255)

                                            aCCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGaa                                                     >  1:5202750/1‑101 (MQ=255)

                                             ccTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAAt                                                    >  2:5202755/1‑101 (MQ=255)

                                             ccTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAAt                                                    >  1:5202754/1‑101 (MQ=255)

                                               tACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCa                                                  >  1:5202759/1‑101 (MQ=255)

                                                 cATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGc                                                <  2:5202320/101‑1 (MQ=255)

                                                 cATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGc                                                <  1:5202360/101‑1 (MQ=255)

                                                  aTCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCg                                               >  1:5202763/1‑101 (MQ=255)

                                                    cGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAg                                                 <  1:5202344/97‑1 (MQ=255)

                                                    cGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGAc                                             <  2:5202601/101‑1 (MQ=255)

                                                     ggCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACt                                            <  1:5202137/101‑1 (MQ=255)

                                                     ggCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACt                                            <  1:5202434/101‑1 (MQ=255)

                                                     ggCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACt                                            >  2:5202767/1‑101 (MQ=255)

                                                     ggCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACt                                            >  1:5202766/1‑101 (MQ=255)

                                                        ctctGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCaa                                         >  1:5202771/1‑101 (MQ=255)

                                                          ctGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACg                                       >  1:5202775/1‑101 (MQ=255)

                                                           tGCAAGTTAAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACgg                                      >  2:5202777/1‑101 (MQ=255)

                                                             cAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTa                                    >  1:5202780/1‑101 (MQ=255)

                                                             cAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTa                                    <  1:5202100/101‑1 (MQ=255)

                                                             cAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTa                                    <  1:5202113/101‑1 (MQ=255)

                                                             cAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTa                                    <  1:5202295/101‑1 (MQ=255)

                                                              aaGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTaa                                   >  2:5202782/1‑101 (MQ=255)

                                                               aGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCa                                          >  2:5202787/1‑93 (MQ=255)

                                                                gTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGaaaa                                                               <  2:5201906/71‑1 (MQ=255)

                                                                gTTCAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAAcc                                 >  1:5202789/1‑101 (MQ=255)

                                                                   cAATAATTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGa                              >  1:5202793/1‑101 (MQ=255)

                                                                    aataatTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGaa                             >  2:5202795/1‑101 (MQ=255)

                                                                      taatTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATc                           >  1:5202800/1‑101 (MQ=255)

                                                                      taatTATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATc                           >  2:5202799/1‑101 (MQ=255)

                                                                          tATGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCa                       >  2:5202805/1‑101 (MQ=255)

                                                                           aTGCGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAg                      >  1:5202806/1‑101 (MQ=255)

                                                                              cGTTTTCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGAtt                   >  2:5202812/1‑101 (MQ=255)

                                                                                 tttCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTc                >  2:5202816/1‑101 (MQ=255)

                                                                                 tttCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTc                >  1:5202815/1‑101 (MQ=255)

                                                                                  ttCGTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTcc               <  1:5202247/101‑1 (MQ=255)

                                                                                     gTTGTGATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCctct            >  1:5202819/1‑101 (MQ=255)

                                                                                       tgtgATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTgg          >  2:5202823/1‑101 (MQ=255)

                                                                                        gtgATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGc         >  1:5202827/1‑101 (MQ=255)

                                                                                        gtgATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGc         <  2:5202118/101‑1 (MQ=255)

                                                                                        gtgATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGc         >  2:5202828/1‑101 (MQ=255)

                                                                                         tgATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGcc        <  2:5202411/101‑1 (MQ=255)

                                                                                         tgATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGcc        <  2:5202229/101‑1 (MQ=255)

                                                                                          gATTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCa       <  2:5202023/101‑1 (MQ=255)

                                                                                           aTTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAg      <  2:5202433/101‑1 (MQ=255)

                                                                                           aTTTTTCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAg      >  2:5202832/1‑101 (MQ=255)

                                                                                            tttttCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAGt     <  1:5202406/101‑1 (MQ=255)

                                                                                            tttttCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAGt     <  2:5202250/101‑1 (MQ=255)

                                                                                              tttCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAGTaa   <  2:5202182/101‑1 (MQ=255)

                                                                                              tttCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAGTaa   >  2:5202836/1‑101 (MQ=255)

                                                                                               ttCGCATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAGTAAc  >  1:5202840/1‑101 (MQ=255)

GCATTCACTAAACGAATAACAGGTTGTAAACGACTGATATGTTGACCTACATCGGCCTCTGCAAGTTCAATAATTATGCGTTTTCGTTGTGATTTTTCACATTGCATTAACGTATCGCGCAGCCAACGCTGAAAACGCGGGCGAATCAGCGACTCAACGGTAACCTGAATCGCCAGATTTTCCTCTGGCCAGTAAC  >  NC_000913/3401720‑3401915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`