BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,457,365	T→C	V330A (GTC→GCC)	gspD →	Type II secretion system protein GspD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,457,365	0	T	C	100.0%	1043.8 / NA	248	V330A (GTC→GCC)	gspD	Type II secretion system protein GspD
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (126/122); total (126/122)

Only 100 of 254 total aligned reads displayed.

GAATGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGA  >  NC_000913/3457267‑3457462

 aaTGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCa                                                                                                <  2:5289635/101‑1 (MQ=255)

 aaTGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCa                                                                                                <  2:5289426/101‑1 (MQ=255)

 aaTGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCa                                                                                                >  1:5289999/1‑101 (MQ=255)

 aaTGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCa                                                                                                <  2:5289591/101‑1 (MQ=255)

 aaTGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCa                                                                                                >  2:5290001/1‑101 (MQ=255)

  aTGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAg                                                                                               <  1:5289686/101‑1 (MQ=255)

   tGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAgg                                                                                              <  2:5289510/101‑1 (MQ=255)

   tGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAgg                                                                                              >  1:5290003/1‑101 (MQ=255)

    gcgcGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGa                                                                                             >  2:5290005/1‑101 (MQ=255)

    gcgcGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGa                                                                                             <  2:5289740/101‑1 (MQ=255)

     cgcgTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGaa                                                                                            <  1:5289656/101‑1 (MQ=255)

      gcgTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGaaa                                                                                           >  1:5290008/1‑101 (MQ=255)

       cgTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGaaaa                                                                                          <  2:5289645/101‑1 (MQ=255)

       cgTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGaaaa                                                                                          >  1:5290010/1‑101 (MQ=255)

        gTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGaaaaa                                                                                         >  2:5290012/1‑101 (MQ=255)

        gTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGaaaaa                                                                                         <  1:5289505/101‑1 (MQ=255)

        gTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGaaaaa                                                                                         >  1:5290015/1‑101 (MQ=255)

         tAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAAc                                                                                        >  2:5290017/1‑101 (MQ=255)

         tAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAAc                                                                                        >  1:5290018/1‑101 (MQ=255)

           aGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTc                                                                                      >  1:5290022/1‑101 (MQ=255)

           aGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTc                                                                                      <  2:5289493/101‑1 (MQ=255)

            gCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCg                                                                                     >  1:5290025/1‑101 (MQ=255)

             cccTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGc                                                                                    >  2:5290026/1‑101 (MQ=255)

              cctcctCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGcc                                                                                   <  1:5289647/101‑1 (MQ=255)

               ctcctcTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCa                                                                                  >  2:5290031/1‑101 (MQ=255)

                tcctcTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCAc                                                                                 >  1:5290034/1‑101 (MQ=255)

                 cctcTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGcc                                                                                   <  2:5289557/98‑1 (MQ=255)

                 cctcTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACg                                                                                <  1:5289582/101‑1 (MQ=255)

                  ctctTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACgg                                                                               >  2:5290038/1‑101 (MQ=255)

                   tcttctGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGt                                                                              >  1:5290039/1‑101 (MQ=255)

                   tcttctGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGt                                                                              <  2:5289586/101‑1 (MQ=255)

                    cttctGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTa                                                                             <  1:5289845/101‑1 (MQ=255)

                    cttctGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTa                                                                             >  1:5290042/1‑101 (MQ=255)

                    cttctGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTa                                                                             >  2:5290044/1‑101 (MQ=255)

                       ctGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAAtt                                                                          <  1:5289624/101‑1 (MQ=255)

                       ctGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAAtt                                                                          <  2:5289623/101‑1 (MQ=255)

                          gcgcGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTaa                                                                            <  1:5289597/96‑1 (MQ=255)

                           cgcgATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTgcgc                                                                      <  2:5289486/101‑1 (MQ=255)

                           cgcgATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTgcgc                                                                      <  2:5289716/101‑1 (MQ=255)

                           cgcgATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTgcgc                                                                      >  1:5290048/1‑101 (MQ=255)

                            gcgATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGcgcg                                                                     >  1:5290050/1‑101 (MQ=255)

                             cgATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGt                                                                    >  2:5290051/1‑101 (MQ=255)

                               aTGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAgtccgccc                                                                                                 <  2:5289759/70‑1 (MQ=255)

                               aTGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCt                                                                  >  2:5290055/1‑101 (MQ=255)

                                    tAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACa                                                             >  1:5290056/1‑101 (MQ=255)

                                     aaCGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACAt                                                            <  1:5289533/101‑1 (MQ=255)

                                     aaCGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACAt                                                            >  1:5290058/1‑101 (MQ=255)

                                      aCGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACAtt                                                           <  2:5289616/101‑1 (MQ=255)

                                      aCGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACAtt                                                           >  1:5290062/1‑101 (MQ=255)

                                      aCGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACAtt                                                           <  2:5289460/101‑1 (MQ=255)

                                      aCGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACAtt                                                           <  2:5289476/101‑1 (MQ=255)

                                       cGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTc                                                          <  2:5289735/101‑1 (MQ=255)

                                        gTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCg                                                         <  2:5289568/101‑1 (MQ=255)

                                         tCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGc                                                        <  1:5289861/101‑1 (MQ=255)

                                          cGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGcc                                                       <  2:5289755/101‑1 (MQ=255)

                                           gCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCg                                                      >  1:5290064/1‑101 (MQ=255)

                                              aTTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGc                                                   >  2:5290068/1‑101 (MQ=255)

                                               ttACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGca                                                  >  1:5290069/1‑101 (MQ=255)

                                               ttACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGca                                                  <  1:5289677/101‑1 (MQ=255)

                                                 aCCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGcaca                                                >  1:5290074/1‑101 (MQ=255)

                                                 aCCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGcaca                                                <  2:5289642/101‑1 (MQ=255)

                                                 aCCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGcaca                                                >  2:5290072/1‑101 (MQ=255)

                                                  ccgccgATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGTACATTCGCCGTGCACAg                                               <  2:5289579/101‑1 (MQ=255)

                                                  ccgccgATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCg                                                         <  2:5289415/91‑1 (MQ=255)

                                                    gccgATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGt                                             <  2:5289690/101‑1 (MQ=255)

                                                    gccgATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGt                                             >  1:5290078/1‑101 (MQ=255)

                                                     ccgATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTg                                            <  2:5289605/101‑1 (MQ=255)

                                                     ccgATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTg                                            <  1:5289801/101‑1 (MQ=255)

                                                      cgATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGc                                           >  1:5290081/1‑101 (MQ=255)

                                                        aTGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTg                                         >  2:5290084/1‑101 (MQ=255)

                                                          gAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGcac                                                 <  1:5289410/91‑1 (MQ=255)

                                                          gAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGt                                       >  2:5290087/1‑101 (MQ=255)

                                                           aaCAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGtt                                      >  1:5290088/1‑101 (MQ=255)

                                                             cAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGa                                    <  1:5289738/101‑1 (MQ=255)

                                                             cAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGa                                    >  2:5290092/1‑101 (MQ=255)

                                                              aGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAg                                   <  2:5289883/101‑1 (MQ=255)

                                                                aCTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGc                                 <  1:5289494/101‑1 (MQ=255)

                                                                 cTAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCa                                >  1:5290095/1‑101 (MQ=255)

                                                                  tAACTCTCTGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCaa                               >  1:5290097/1‑101 (MQ=255)

                                                                     ctctctGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACa                                                             <  2:5289542/68‑1 (MQ=255)

                                                                     ctctctGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAatca                            >  2:5290098/1‑101 (MQ=255)

                                                                      tctctGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAatcat                           <  2:5289571/101‑1 (MQ=255)

                                                                      tctctGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAatcat                           <  2:5289810/101‑1 (MQ=255)

                                                                        tctGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCg                         <  2:5289791/101‑1 (MQ=255)

                                                                        tctGGTCATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCg                         >  2:5290101/1‑101 (MQ=255)

                                                                              cATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGcc                                                                                   <  2:5289611/37‑1 (MQ=255)

                                                                              cATTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAg                   >  1:5290105/1‑101 (MQ=255)

                                                                               aTTACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGt                  >  2:5290107/1‑101 (MQ=255)

                                                                                 tACCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTc                >  1:5290109/1‑101 (MQ=255)

                                                                                  aCCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCa               >  1:5290113/1‑101 (MQ=255)

                                                                                  aCCGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCa               >  2:5290112/1‑101 (MQ=255)

                                                                                   ccGCTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAg              <  1:5289419/101‑1 (MQ=255)

                                                                                      cTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGAt           <  2:5289287/101‑1 (MQ=255)

                                                                                      cTGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGAt           >  1:5290116/1‑101 (MQ=255)

                                                                                       tGACCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATg          >  2:5290118/1‑101 (MQ=255)

                                                                                         aCCAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGa        >  2:5290120/1‑101 (MQ=255)

                                                                                           cAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGaaa      <  2:5289712/101‑1 (MQ=255)

                                                                                           cAGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGaaa      >  2:5290123/1‑101 (MQ=255)

                                                                                            aGTCCGCCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTg                      >  1:5290126/1‑84 (MQ=255)

                                                                                               ccgcccAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGa  <  1:5289832/101‑1 (MQ=255)

GAATGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGA  >  NC_000913/3457267‑3457462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`