BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,749,014	G→A	G81S (GGC→AGC)	yfjD →	putative inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,749,014	0	G	A	100.0%	987.2 / NA	236	G81S (GGC→AGC)	yfjD	putative inner membrane protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (121/115); total (121/115)

Only 100 of 236 total aligned reads displayed.

CGGCCAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTATTGCC  >  NC_000913/2748916‑2749111

cGGCCAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGc                                                                                                 <  2:3552021/101‑1 (MQ=255)

 ggCCAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCa                                                                                                <  2:3552118/101‑1 (MQ=255)

  gCCAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCAc                                                                                               <  1:3551957/101‑1 (MQ=255)

  gCCAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCAc                                                                                               <  2:3552184/101‑1 (MQ=255)

    cAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTa                                                                                             <  2:3552136/101‑1 (MQ=255)

    cAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTa                                                                                             >  1:3552459/1‑101 (MQ=255)

     aaaCGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTAt                                                                                            >  2:3552460/1‑101 (MQ=255)

      aaCGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTAtt                                                                                           >  2:3552462/1‑101 (MQ=255)

          cgTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTAttgttg                                                                                       >  2:3552466/1‑101 (MQ=255)

           gTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGACAATATTCTTGCCTCCGCGCTCAGCACTATTGTTgg                                                                                      >  1:3552468/1‑101 (MQ=255)

            tCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTggg                                                                                     >  2:3552470/1‑101 (MQ=255)

            tCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTggg                                                                                     <  2:3552233/101‑1 (MQ=255)

             cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGa                                                                                    <  2:3551976/101‑1 (MQ=255)

               aaaaaTTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATg                                                                                  >  2:3552472/1‑101 (MQ=255)

               aaaaaTTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATg                                                                                  <  1:3552106/101‑1 (MQ=255)

                aaaaTTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGc                                                                                 <  1:3552047/101‑1 (MQ=255)

                aaaaTTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGc                                                                                 >  2:3552475/1‑101 (MQ=255)

                 aaaTTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCAc                                                                                               <  2:3552060/86‑1 (MQ=255)

                  aaTTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTAttgttg                                                                                       >  2:3552479/1‑93 (MQ=255)

                    ttGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGttt                                                                             <  2:3552088/101‑1 (MQ=255)

                      gctgcGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGt                                                                           >  2:3552482/1‑101 (MQ=255)

                       ctgcGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTa                                                                          >  1:3552483/1‑101 (MQ=255)

                         gcGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACg                                                                        <  1:3552042/101‑1 (MQ=255)

                         gcGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACg                                                                        <  1:3552005/101‑1 (MQ=255)

                          cGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACgg                                                                       <  2:3551996/101‑1 (MQ=255)

                           gTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGc                                                                      >  1:3552486/1‑101 (MQ=255)

                             aaGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGa                                                                    <  1:3552327/101‑1 (MQ=255)

                              aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGAt                                                                   <  1:3552104/101‑1 (MQ=255)

                               gCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATg                                                                  <  2:3552281/101‑1 (MQ=255)

                                 cAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCg                                                                >  1:3552489/1‑101 (MQ=255)

                                  aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCgg                                                               >  2:3552492/1‑101 (MQ=255)

                                   gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg                                                              <  1:3552089/101‑1 (MQ=255)

                                   gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg                                                              >  2:3552494/1‑101 (MQ=255)

                                   gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg                                                              >  1:3552497/1‑101 (MQ=255)

                                   gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg                                                              >  1:3552495/1‑101 (MQ=255)

                                    aCCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGc                                                             <  1:3552066/101‑1 (MQ=255)

                                      cGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGt                                                           >  1:3552499/1‑101 (MQ=255)

                                       gCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTg                                                          >  2:3552501/1‑101 (MQ=255)

                                       gCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTg                                                          <  1:3552202/101‑1 (MQ=255)

                                        ccTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCg                                                                >  1:3552504/1‑94 (MQ=255)

                                         cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGc                                                        <  2:3552173/101‑1 (MQ=255)

                                         cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAACATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGc                                                        <  1:3552438/101‑1 (MQ=255)

                                          tGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCa                                                       <  2:3552366/101‑1 (MQ=255)

                                          tGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCa                                                       >  2:3552507/1‑101 (MQ=255)

                                             tAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAAtt                                                    <  1:3552186/101‑1 (MQ=255)

                                              aaGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTg                                                   <  1:3552189/101‑1 (MQ=255)

                                                gCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCg                                                 >  1:3552509/1‑101 (MQ=255)

                                                 ccTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGa                                                <  1:3552153/101‑1 (MQ=255)

                                                 ccTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGa                                                >  2:3552512/1‑101 (MQ=255)

                                                  cTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGAc                                               >  1:3552513/1‑101 (MQ=255)

                                                   tGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACt                                              >  1:3552517/1‑101 (MQ=255)

                                                         tAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGtgtg                                        >  2:3552519/1‑101 (MQ=255)

                                                         tAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGtgtg                                        <  1:3552151/101‑1 (MQ=255)

                                                          aaTCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGc                                       >  1:3552522/1‑101 (MQ=255)

                                                            tCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTg                                     <  2:3552040/101‑1 (MQ=255)

                                                            tCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTg                                     <  2:3552056/101‑1 (MQ=255)

                                                             cGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGa                                    >  2:3552525/1‑101 (MQ=255)

                                                              ggCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGAc                                   >  1:3552527/1‑101 (MQ=255)

                                                               gCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACt                                  >  2:3552528/1‑101 (MQ=255)

                                                               gCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACt                                  <  1:3552210/101‑1 (MQ=255)

                                                                  aTAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACtttt                               >  1:3552533/1‑101 (MQ=255)

                                                                  aTAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACtttt                               >  2:3552532/1‑101 (MQ=255)

                                                                   tAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTg                              >  1:3552535/1‑101 (MQ=255)

                                                                   tAACCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTg                              <  2:3552193/101‑1 (MQ=255)

                                                                    aaCCTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGt                             >  2:3552537/1‑101 (MQ=255)

                                                                      ccTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCg                           >  2:3552541/1‑101 (MQ=255)

                                                                       cTGGTCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGt                          >  1:3552542/1‑101 (MQ=255)

                                                                           tCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTg                      <  2:3552093/101‑1 (MQ=255)

                                                                           tCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTg                      <  1:3552119/101‑1 (MQ=255)

                                                                           tCAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTg                      <  1:3552206/101‑1 (MQ=255)

                                                                            cAATATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTgg                     >  2:3552546/1‑101 (MQ=255)

                                                                             aaTATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGt                    <  2:3551888/101‑1 (MQ=255)

                                                                             aaTATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGt                    >  2:3552549/1‑101 (MQ=255)

                                                                             aaTATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGt                    >  1:3552548/1‑101 (MQ=255)

                                                                             aaTATTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGt                    <  1:3552248/101‑1 (MQ=255)

                                                                              atatTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTa                   <  2:3552382/101‑1 (MQ=255)

                                                                              atatTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTa                   >  2:3552551/1‑101 (MQ=255)

                                                                               tatTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTAt                  <  1:3552171/101‑1 (MQ=255)

                                                                                atTCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTTCGACTGGTGTGCTGACTTTTGTCGTACTGGTAtt                 >  1:3552554/1‑101 (MQ=255)

                                                                                 ttCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTAttt                <  1:3552116/101‑1 (MQ=255)

                                                                                 ttCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTAttt                <  1:3552223/101‑1 (MQ=255)

                                                                                 ttCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTAttt                >  2:3552558/1‑101 (MQ=255)

                                                                                 ttCTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTATGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTAttt                >  1:3552559/1‑101 (MQ=255)

                                                                                   cTTGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGc              <  1:3552277/101‑1 (MQ=255)

                                                                                    ttGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCt             <  1:3552133/101‑1 (MQ=255)

                                                                                    ttGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCt             <  2:3552181/101‑1 (MQ=255)

                                                                                     tGCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCg                                                                <  2:3552071/49‑1 (MQ=255)

                                                                                      gCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGa           >  1:3552563/1‑101 (MQ=255)

                                                                                      gCCTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGa           >  2:3552562/1‑101 (MQ=255)

                                                                                       ccTCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAg          >  2:3552565/1‑101 (MQ=255)

                                                                                         tCCGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTgg                     <  1:3551885/88‑1 (MQ=255)

                                                                                          ccGCGCTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTa       <  2:3552141/101‑1 (MQ=255)

                                                                                            gcgcTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTAtt     >  1:3552569/1‑101 (MQ=255)

                                                                                            gcgcTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTAtt     <  1:3552312/101‑1 (MQ=255)

                                                                                            gcgcTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTAtt     >  2:3552573/1‑101 (MQ=255)

                                                                                            gcgcTCAGCACTATTGTTGGGATGCGTTTGTAAGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTAtt     >  2:3552571/1‑101 (MQ=255)

                                                                                             cgcTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTATTg    <  2:3552397/101‑1 (MQ=255)

                                                                                              gcTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTATTGc   <  2:3552245/101‑1 (MQ=255)

                                                                                              gcTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTATTGc   <  2:3552158/101‑1 (MQ=255)

                                                                                               cTCAGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTATTGcc  >  1:3552577/1‑101 (MQ=255)

CGGCCAAACGCGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGCGTGGCAATTGCGACTGGTGTGCTGACTTTTGTCGTACTGGTATTTGCTGAGGTATTGCC  >  NC_000913/2748916‑2749111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`