BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,178,981	A→G	T35A (ACT→GCT)	rplA →	50S ribosomal subunit protein L1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,178,981	0	A	G	100.0%	1125.5 / NA	277	T35A (ACT→GCT)	rplA	50S ribosomal subunit protein L1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (160/117); total (160/117)

Only 100 of 280 total aligned reads displayed.

CTAAACTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGACTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTACTGCC  >  NC_000913/4178883‑4179075

 tAAACTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTg                                                                                             >  2:5509639/1‑101 (MQ=255)

   aaCTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGgctgct                                                                                           >  1:5509642/1‑101 (MQ=255)

   aaCTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGgctgct                                                                                           <  1:5509307/101‑1 (MQ=255)

    aCTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTa                                                                                          <  2:5509471/101‑1 (MQ=255)

    aCTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTa                                                                                          <  2:5509237/101‑1 (MQ=255)

     cTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTaa                                                                                         <  2:5509337/101‑1 (MQ=255)

     cTGACCAAGCGCATGCGCGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTaa                                                                                         >  2:5509645/1‑101 (MQ=255)

      tGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTaaa                                                                                        >  2:5509652/1‑101 (MQ=255)

      tGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTaaa                                                                                        >  1:5509650/1‑101 (MQ=255)

      tGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACCGCTGAAAGAGCTGGCGGCTGCTaaa                                                                                        >  2:5509648/1‑101 (MQ=255)

       gACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAAt                                                                                       >  1:5509654/1‑101 (MQ=255)

       gACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAAt                                                                                       <  1:5509504/101‑1 (MQ=255)

        aCCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAAtt                                                                                      <  1:5508972/101‑1 (MQ=255)

        aCCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAAtt                                                                                      <  2:5509182/101‑1 (MQ=255)

         ccAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTc                                                                                     >  2:5509661/1‑101 (MQ=255)

         ccAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTc                                                                                     >  1:5509658/1‑101 (MQ=255)

           aaGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCg                                                                                    >  2:5509667/1‑100 (MQ=255)

           aaGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGt                                                                                   >  1:5509665/1‑101 (MQ=255)

              cgcATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGa                                                                                <  1:5509255/101‑1 (MQ=255)

              cgcATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGa                                                                                >  1:5509669/1‑101 (MQ=255)

               gcATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGaa                                                                               <  2:5509282/101‑1 (MQ=255)

               gcATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGaa                                                                               <  2:5509151/101‑1 (MQ=255)

               gcATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGaa                                                                               >  1:5509672/1‑101 (MQ=255)

                cATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGaaa                                                                              <  1:5509331/101‑1 (MQ=255)

                 aTGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAg                                                                             <  2:5509379/101‑1 (MQ=255)

                 aTGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAg                                                                             >  1:5509674/1‑101 (MQ=255)

                    cGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGt                                                                          >  1:5509677/1‑101 (MQ=255)

                      tgtTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTgg                                                                        >  1:5509680/1‑101 (MQ=255)

                       gtTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGa                                                                       <  1:5509319/101‑1 (MQ=255)

                        ttATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGAc                                                                      <  1:5509222/101‑1 (MQ=255)

                         tATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACg                                                                     >  2:5509684/1‑101 (MQ=255)

                           tCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTa                                                                   <  2:5509291/101‑1 (MQ=255)

                            ccGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAg                                                                  >  1:5509686/1‑101 (MQ=255)

                             cgcgAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGc                                                                 <  2:5509035/101‑1 (MQ=255)

                              gcgAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCt                                                                >  1:5509689/1‑101 (MQ=255)

                               cgAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTgg                                                                        >  2:5509693/1‑92 (MQ=255)

                               cgAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTg                                                               >  1:5509692/1‑101 (MQ=255)

                               cgAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTg                                                               <  1:5509361/101‑1 (MQ=255)

                                 agaAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGtt                                                             >  2:5509696/1‑101 (MQ=255)

                                    aaGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAAc                                                          <  2:5509254/101‑1 (MQ=255)

                                     aGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAAcc                                                         >  1:5509701/1‑101 (MQ=255)

                                      gTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCt                                                        >  1:5509705/1‑101 (MQ=255)

                                       ttGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTc                                                       >  2:5509707/1‑101 (MQ=255)

                                        tGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCg                                                      <  2:5509363/101‑1 (MQ=255)

                                        tGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCg                                                      >  2:5509711/1‑101 (MQ=255)

                                         gATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCgg                                                     >  1:5509713/1‑101 (MQ=255)

                                          aTGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGc                                                    <  1:5509139/101‑1 (MQ=255)

                                           tGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCa                                                   >  2:5509715/1‑101 (MQ=255)

                                            gCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCAt                                                  <  2:5509271/101‑1 (MQ=255)

                                             cAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATc                                                 >  2:5509719/1‑101 (MQ=255)

                                              aaCCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCa                                                   <  1:5509454/98‑1 (MQ=255)

                                              aaCCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCg                                                >  1:5509723/1‑101 (MQ=255)

                                              aaCCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCg                                                >  1:5509720/1‑101 (MQ=255)

                                               aCCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGa                                               >  2:5509725/1‑101 (MQ=255)

                                                ccAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGAc                                              <  2:5509346/101‑1 (MQ=255)

                                                  aaaCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCg                                                <  1:5509410/97‑1 (MQ=255)

                                                  aaaCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGc                                            >  2:5509729/1‑101 (MQ=255)

                                                   aaCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCt                                           <  2:5509323/101‑1 (MQ=255)

                                                   aaCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCt                                           >  1:5509733/1‑101 (MQ=255)

                                                   aaCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCt                                           >  2:5509734/1‑101 (MQ=255)

                                                    aCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTc                                          <  2:5509171/101‑1 (MQ=255)

                                                    aCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTc                                          <  1:5509177/101‑1 (MQ=255)

                                                    aCAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTc                                          <  1:5509163/101‑1 (MQ=255)

                                                     cAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCg                                         <  2:5509585/101‑1 (MQ=255)

                                                     cAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCg                                         >  2:5509738/1‑101 (MQ=255)

                                                     cAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCg                                         <  2:5509431/101‑1 (MQ=255)

                                                       gTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTa                                       >  1:5509739/1‑101 (MQ=255)

                                                        tACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTaa                                      <  2:5509157/101‑1 (MQ=255)

                                                         aCGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTaaa                                     >  1:5509743/1‑101 (MQ=255)

                                                           gACATCAACGTAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTaa                                      >  1:5509747/1‑98 (MQ=255)

                                                            aCATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTa                                       >  1:5509749/1‑96 (MQ=255)

                                                                cAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGAcc                              >  1:5509752/1‑101 (MQ=255)

                                                                 aaCGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCa                             >  2:5509755/1‑101 (MQ=255)

                                                                 aaCGAAGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTCGACGTACCTGTTAAcc                                                         >  1:5509756/1‑73 (MQ=38)

                                                                    gAAGCTATCGCACTGCTGAAAGTGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGaa                          >  1:5509761/1‑101 (MQ=255)

                                                                     aaGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAac                         <  1:5509424/101‑1 (MQ=255)

                                                                     aaGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAac                         <  2:5509107/101‑1 (MQ=255)

                                                                     aaGCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAac                         >  2:5509762/1‑101 (MQ=255)

                                                                       gCTATCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAacgt                       >  2:5509765/1‑101 (MQ=255)

                                                                          aTCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAacgtacg                    <  2:5509411/101‑1 (MQ=255)

                                                                           tCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAacgtacgt                   >  1:5509769/1‑101 (MQ=255)

                                                                           tCGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAacgtacgt                   <  1:5509269/101‑1 (MQ=255)

                                                                            cGCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACgtg                  <  1:5509286/101‑1 (MQ=255)

                                                                             gCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACgtgg                 >  1:5509771/1‑101 (MQ=255)

                                                                             gCACTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACgtgg                 <  2:5509312/101‑1 (MQ=255)

                                                                               aCTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACgtggtg               >  1:5509774/1‑101 (MQ=255)

                                                                               aCTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACgtggtg               <  1:5509372/101‑1 (MQ=255)

                                                                               aCTGCTGAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACgtggtg               <  1:5509245/101‑1 (MQ=255)

                                                                                ctgctgAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGc              <  2:5509394/101‑1 (MQ=255)

                                                                                  gctgAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCaa            >  1:5509777/1‑101 (MQ=255)

                                                                                  gctgAAAGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCaa            >  2:5509780/1‑101 (MQ=255)

                                                                                      aaaGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGt        >  2:5509783/1‑101 (MQ=255)

                                                                                      aaaGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGt        >  1:5509785/1‑101 (MQ=255)

                                                                                       aaGAGCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTa       <  2:5509524/101‑1 (MQ=255)

                                                                                        agagCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTAc      <  1:5509386/101‑1 (MQ=255)

                                                                                        agagCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTAc      >  2:5509788/1‑101 (MQ=255)

                                                                                          agCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTACTg    >  2:5509792/1‑101 (MQ=255)

                                                                                          agCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTACTg    >  1:5509793/1‑101 (MQ=255)

                                                                                          agCTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTACTg    <  2:5509121/101‑1 (MQ=255)

                                                                                            cTGGCGGCTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTACTGcc  >  2:5509797/1‑101 (MQ=255)

CTAAACTGACCAAGCGCATGCGTGTTATCCGCGAGAAAGTTGATGCAACCAAACAGTACGACATCAACGAAGCTATCGCACTGCTGAAAGAGCTGGCGACTGCTAAATTCGTAGAAAGCGTGGACGTAGCTGTTAACCTCGGCATCGACGCTCGTAAATCTGACCAGAACGTACGTGGTGCAACTGTACTGCC  >  NC_000913/4178883‑4179075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`