| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,982,684 | (C)8→11 | noncoding (79/87 nt) | leuT → | tRNA‑Leu |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,982,676 | 1 | . | C | 90.0% | 175.2 / 23.7 | 70 | noncoding (71/87 nt) | leuT | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base C (2/61); total (2/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.37e-01 | |||||||||||
| * | NC_000913 | 3,982,676 | 2 | . | C | 90.0% | 179.0 / 23.7 | 70 | noncoding (71/87 nt) | leuT | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base C (2/61); total (2/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
| * | NC_000913 | 3,982,676 | 3 | . | C | 85.7% | 167.0 / 37.7 | 70 | noncoding (71/87 nt) | leuT | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (1/9); new base C (1/59); total (2/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
AGCCACCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3982576‑3982763 ||| aGCCACCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑t < 2:6561108/101‑1 (MQ=255)aGCCACCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑t < 2:6561600/101‑1 (MQ=255)aGCCACCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑t < 1:6561755/101‑1 (MQ=255) gCCACCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑c < 1:6561543/101‑1 (MQ=255) cACCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑c > 2:6561941/1‑101 (MQ=255) aCCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cc > 1:6561943/1‑101 (MQ=255) cccATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccc < 2:6561457/101‑1 (MQ=255) cccATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccc < 1:6561452/101‑1 (MQ=255) cccATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccc > 1:6561948/1‑101 (MQ=255) ccATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑ccccc > 1:6561949/1‑101 (MQ=255) attattAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑t < 2:6561562/92‑1 (MQ=255) ttattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccccccc < 1:6561367/101‑3 (MQ=255) attaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccccccctc < 1:6561534/101‑5 (MQ=255) attaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccccccc > 1:6561958/1‑97 (MQ=255) attaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑‑T‑‑‑cc‑‑‑cccccccccc > 1:6561959/1‑97 (MQ=255) ttaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑ccccccccctc < 1:6561455/101‑6 (MQ=255) ttaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑ccccccccctc < 1:6561569/101‑6 (MQ=255) ttaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccccccc > 2:6561960/1‑96 (MQ=255) taGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑ccccccccc > 2:6561965/1‑95 (MQ=255) taGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑cccccccc > 2:6561964/1‑95 (MQ=255) aGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAG‑‑‑T‑‑‑cc‑‑‑cccccccc > 1:6561966/1‑94 (MQ=255) gAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑ccccccccc > 1:6561970/1‑93 (MQ=255) tgACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGAc < 1:6561352/101‑1 (MQ=11) aaTGCGAAGGTGGGGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑cc‑‑‑ccccccccc > 1:6561995/1‑82 (MQ=9) aaTGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTa < 2:6561581/101‑1 (MQ=11) tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTaaa < 1:6561623/101‑1 (MQ=11) tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTaaa < 1:6561497/101‑1 (MQ=11) cGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGa < 2:6561697/101‑1 (MQ=14) gAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGaa < 1:6561485/101‑1 (MQ=14) aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAAtt < 2:6561515/101‑1 (MQ=14) aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCC‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTg < 1:6561572/101‑1 (MQ=255) gTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGa < 1:6561524/101‑1 (MQ=14) ggCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAAc < 2:6561640/101‑1 (MQ=17) aTTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTa < 1:6561514/97‑1 (MQ=17) ttGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAt < 1:6561779/101‑1 (MQ=18) tGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAtt < 1:6561660/101‑1 (MQ=18) tGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCC‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTc > 1:6562027/1‑101 (MQ=255) ggTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTc < 1:6561720/101‑1 (MQ=18) gTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCa < 2:6561606/101‑1 (MQ=18) gACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaaa < 1:6561750/101‑1 (MQ=18) gcgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGc < 1:6561676/101‑1 (MQ=21) gcgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGc < 1:6561653/101‑1 (MQ=21) gcgcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGc < 2:6561679/101‑1 (MQ=21) gcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGa < 2:6561544/76‑1 (MQ=14) gcTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTaaaaa < 1:6561595/89‑1 (MQ=18) gcTAGCTTCAGGTGTTAGTGTCCTTACGCACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGa < 1:6561383/81‑1 (MQ=17) cTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAGCCCC‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAg < 1:6561647/97‑1 (MQ=21) cTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGt < 1:6561585/101‑1 (MQ=21) tAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAGGCCC‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTa < 1:6561556/101‑1 (MQ=21) tAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTa < 1:6561191/101‑1 (MQ=21) aGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAt < 1:6561535/101‑1 (MQ=21) gCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGa < 1:6561670/77‑1 (MQ=17) ttCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAt < 1:6561275/98‑1 (MQ=25) ttCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTc < 1:6561354/101‑1 (MQ=25) ttCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTc < 2:6561737/101‑1 (MQ=25) tCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCg < 1:6561428/101‑1 (MQ=25) cAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 1:6561464/101‑1 (MQ=25) aGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 2:6561796/100‑1 (MQ=25) aGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCC‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAtt < 1:6561605/95‑1 (MQ=25) gtgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGa < 2:6561440/101‑1 (MQ=25) gtgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGa < 1:6561402/101‑1 (MQ=25) gtgtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGa < 2:6561509/101‑1 (MQ=25) gtTAGTGTCCTTACGGACGTGGGGGTTCAAGGCCC‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGt < 2:6561715/101‑1 (MQ=37) gtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGt < 1:6561749/101‑1 (MQ=37) gtTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGt < 1:6561709/101‑1 (MQ=37) ttAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 1:6561700/95‑1 (MQ=25) ttAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTa < 1:6561672/101‑1 (MQ=37) tAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAg < 2:6561555/101‑1 (MQ=37) gtgtCCTTACGGACGTGGGGGTTCAAGGCCC‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGaa < 1:6561708/60‑1 (MQ=17) tgtCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGa < 1:6561690/58‑1 (MQ=17) tCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACt < 1:6561501/49‑1 (MQ=11) tCCTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTa < 1:6561658/83‑1 (MQ=25) tCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑CCCCACCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAg < 1:6561565/101‑1 (MQ=38) cTTACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgcg < 2:6561361/96‑1 (MQ=38) tACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTg < 1:6561632/101‑1 (MQ=38) tACGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTg < 1:6561537/101‑1 (MQ=38) cGGACGTGGGGGTTCAAGCCCC‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGt < 2:6561741/101‑1 (MQ=255) cGGACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaaaaa < 2:6561482/71‑1 (MQ=25) gggcGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAt < 2:6561522/74‑1 (MQ=37) ggACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTa < 1:6561561/76‑1 (MQ=37) ggACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAtt < 2:6561669/78‑1 (MQ=37) ggACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTgg < 2:6561747/99‑1 (MQ=38) ggACGTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTa < 1:6561688/101‑1 (MQ=39) ggACGTGGGGGTTAAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCaa < 1:6561814/67‑1 (MQ=25) gACGTGGGGGTTCAAGGCCC‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCgg < 1:6561682/81‑1 (MQ=38) gTGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTaa < 1:6561622/42‑1 (MQ=17) gTGGGGGTTCAAG‑‑‑GCCCCC‑‑‑CCCCCCTCGCACCACGACTTTaa < 2:6561624/42‑1 (MQ=12) tGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAg < 2:6561472/43‑1 (MQ=17) tGGGGGTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAg > 2:6562055/1‑69 (MQ=37) ggggTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTa < 1:6561777/38‑1 (MQ=9) ggggTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTaa < 2:6561675/52‑1 (MQ=25) ggggTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGt < 2:6561571/93‑1 (MQ=255) ggggTTCAAG‑‑‑TCCCCC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAc < 1:6561864/101‑1 (MQ=255) ||| AGCCACCCCATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAG‑‑‑T‑‑‑CC‑‑‑CCCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3982576‑3982763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |