BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,383,151	A→G	T318A (ACG→GCG)	degS →	serine endoprotease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,383,151	0	A	G	100.0%	1072.9 / NA	256	T318A (ACG→GCG)	degS	serine endoprotease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (107/149); total (107/149)

Only 100 of 258 total aligned reads displayed.

ATGAAGTGTCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGACGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGA  >  NC_000913/3383053‑3383248

aTGAAGTGTCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCg                                                                                                 <  1:5538095/101‑1 (MQ=255)

 tGAAGTGTCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGa                                                                                                >  1:5538813/1‑101 (MQ=255)

     gtgtCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGa                                                                                            <  2:5538394/101‑1 (MQ=255)

        tCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCa                                                                                         <  2:5538340/101‑1 (MQ=255)

         cACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAg                                                                                        >  2:5538816/1‑101 (MQ=255)

         cACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAg                                                                                        <  2:5538445/101‑1 (MQ=255)

         cACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAg                                                                                        <  1:5538408/101‑1 (MQ=255)

           ccTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGt                                                                                      <  1:5538490/101‑1 (MQ=255)

            cTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTg                                                                                     <  2:5538612/101‑1 (MQ=255)

             tGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTgg                                                                                    >  2:5538819/1‑101 (MQ=255)

              gACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGc                                                                                   >  1:5538820/1‑101 (MQ=255)

              gACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGc                                                                                   <  2:5538232/101‑1 (MQ=255)

                   cccGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGaaa                                                                              <  2:5538271/101‑1 (MQ=255)

                    ccGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAAt                                                                             <  2:5538405/101‑1 (MQ=255)

                     cggcggCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAAtt                                                                            >  2:5538826/1‑101 (MQ=255)

                      ggcggcGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTc                                                                           >  1:5538827/1‑101 (MQ=255)

                      ggcggcGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTc                                                                           <  2:5538349/101‑1 (MQ=255)

                      ggcggcGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTc                                                                           <  2:5538454/101‑1 (MQ=255)

                      ggcggcGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTc                                                                           <  1:5538324/101‑1 (MQ=255)

                       gcggcgAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATc                                                                                          <  2:5538184/85‑1 (MQ=255)

                          gcgAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGccc                                                                       >  2:5538832/1‑101 (MQ=255)

                           cgAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCt                                                                      >  1:5538834/1‑101 (MQ=255)

                            gAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTg                                                                     >  2:5538837/1‑101 (MQ=255)

                            gAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTg                                                                     >  1:5538836/1‑101 (MQ=255)

                            gAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTg                                                                     <  1:5538281/101‑1 (MQ=255)

                             aaTGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTgg                                                                    <  1:5538466/101‑1 (MQ=255)

                             aaTGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTgg                                                                    <  2:5538720/101‑1 (MQ=255)

                              aTGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGt                                                                   <  1:5538628/101‑1 (MQ=255)

                                gCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTc                                                                 <  2:5538592/101‑1 (MQ=255)

                                gCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTc                                                                 >  1:5538841/1‑101 (MQ=255)

                                 cGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCg                                                                                                 >  1:5538846/1‑68 (MQ=255)

                                 cGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCg                                                                >  1:5538843/1‑101 (MQ=255)

                                 cGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCg                                                                <  1:5538420/101‑1 (MQ=255)

                                   ggTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGt                                                              <  1:5538298/101‑1 (MQ=255)

                                   ggTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGt                                                              <  1:5538401/101‑1 (MQ=255)

                                    gTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTg                                                             <  2:5538513/101‑1 (MQ=255)

                                     tATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGa                                                            >  1:5538849/1‑101 (MQ=255)

                                     tATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGa                                                            >  2:5538851/1‑101 (MQ=255)

                                     tATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGa                                                            <  1:5538444/101‑1 (MQ=255)

                                      aTTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGAt                                                           <  1:5538363/101‑1 (MQ=255)

                                      aTTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGAt                                                           <  1:5538373/101‑1 (MQ=255)

                                       ttCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATc                                                          <  1:5538623/101‑1 (MQ=255)

                                         cAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATccc                                                        >  1:5538854/1‑101 (MQ=255)

                                             tCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTgta                                                    >  2:5538856/1‑101 (MQ=255)

                                              cAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTgtag                                                   >  1:5538858/1‑101 (MQ=255)

                                              cAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTgtag                                                   <  1:5538224/101‑1 (MQ=255)

                                                aCGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTgtagta                                                 >  1:5538862/1‑101 (MQ=255)

                                                 cGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGtagtag                                                <  2:5538415/101‑1 (MQ=255)

                                                   aTCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTg                                              <  1:5538301/101‑1 (MQ=255)

                                                   aTCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTg                                              >  2:5538863/1‑101 (MQ=255)

                                                     cTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGAt                                            >  1:5538866/1‑101 (MQ=255)

                                                        attattTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCg                                         >  1:5538869/1‑101 (MQ=255)

                                                         ttattTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGt                                        <  1:5538803/101‑1 (MQ=255)

                                                            tttCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGtgat                                     >  1:5538872/1‑101 (MQ=255)

                                                             ttCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGtgatg                                    <  1:5538509/101‑1 (MQ=255)

                                                             ttCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGtgatg                                    <  1:5538435/101‑1 (MQ=255)

                                                             ttCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGtgatg                                    >  2:5538873/1‑101 (MQ=255)

                                                               cGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTgatgat                                  <  2:5538486/101‑1 (MQ=255)

                                                                ggTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATa                                 <  1:5538584/101‑1 (MQ=255)

                                                                 gTGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATaa                                <  2:5538767/101‑1 (MQ=255)

                                                                  tGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAg                               >  2:5538876/1‑101 (MQ=255)

                                                                  tGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAg                               <  1:5538479/101‑1 (MQ=255)

                                                                  tGGATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAg                               <  2:5538575/101‑1 (MQ=255)

                                                                   ggATAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGc                              <  2:5538372/101‑1 (MQ=255)

                                                                     aTAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAg                            <  1:5538339/101‑1 (MQ=255)

                                                                     aTAACAAACCGGCCATCTCTCCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAg                            >  1:5538880/1‑101 (MQ=255)

                                                                      tAACAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGt                           >  1:5538883/1‑101 (MQ=255)

                                                                        aCAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTa                         >  2:5538884/1‑101 (MQ=255)

                                                                         cAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTaa                        <  1:5538668/101‑1 (MQ=255)

                                                                         cAAACCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTa                         >  2:5538887/1‑100 (MQ=255)

                                                                          aaaCCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAAc                       <  1:5538458/101‑1 (MQ=255)

                                                                           aaCCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACg                      >  1:5538892/1‑101 (MQ=255)

                                                                           aaCCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACg                      >  1:5538889/1‑101 (MQ=255)

                                                                            aCCGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGc                     >  2:5538895/1‑101 (MQ=255)

                                                                              cGGCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCt                    <  2:5538215/100‑1 (MQ=255)

                                                                               ggCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGc                  <  1:5538741/101‑1 (MQ=255)

                                                                               ggCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGc                  >  1:5538897/1‑101 (MQ=255)

                                                                               ggCCATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGc                  <  2:5538569/101‑1 (MQ=255)

                                                                                 ccATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAg                <  1:5538524/101‑1 (MQ=255)

                                                                                  cATCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGtgat                                     <  2:5538389/79‑1 (MQ=255)

                                                                                   aTCTCTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGt              >  1:5538901/1‑101 (MQ=255)

                                                                                    tctcTGCTCTGGAGGCGATGGATCAGGTGGTGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTc             <  2:5538523/101‑1 (MQ=255)

                                                                                    tctcTGCTCTGGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTc             <  1:5538558/101‑1 (MQ=255)

                                                                                     ctctgctctgGAGGCGATGGATCAGGTGTCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCa            <  2:5538527/101‑1 (MQ=255)

                                                                                     ctctgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCa            >  2:5538904/1‑101 (MQ=255)

                                                                                     ctctgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCa            <  2:5538359/101‑1 (MQ=255)

                                                                                     ctctgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCa            >  1:5538903/1‑101 (MQ=255)

                                                                                      tctgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCAc           <  2:5538432/101‑1 (MQ=255)

                                                                                       ctgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAg                <  2:5538330/95‑1 (MQ=255)

                                                                                       ctgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCAcc          >  1:5538907/1‑101 (MQ=255)

                                                                                        tgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCa         <  1:5538249/101‑1 (MQ=255)

                                                                                        tgctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCa         <  1:5538309/101‑1 (MQ=255)

                                                                                         gctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCGCTGGTTCGGTGATCCCTgt                                                     <  2:5538299/56‑1 (MQ=255)

                                                                                         gctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCAt        >  1:5538910/1‑101 (MQ=255)

                                                                                          ctctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCAtt       >  2:5538912/1‑101 (MQ=255)

                                                                                           tctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTc      >  1:5538917/1‑101 (MQ=255)

                                                                                           tctgGAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTc      <  1:5538392/101‑1 (MQ=255)

                                                                                              ggAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAgg   <  2:5538468/101‑1 (MQ=255)

                                                                                              ggAGGCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAgg   <  2:5538677/101‑1 (MQ=255)

                                                                                               gaggCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGa  >  1:5538919/1‑101 (MQ=255)

ATGAAGTGTCACCTGACGGCCCGGCGGCGAATGCGGGTATTCAGGTCAACGATCTGATTATTTCGGTGGATAACAAACCGGCCATCTCTGCTCTGGAGACGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGA  >  NC_000913/3383053‑3383248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`