BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,393,031	T→C	I1076M (ATA→ATG)	yhdP ←	AsmA2 domain‑containing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,393,031	0	T	C	100.0%	1279.7 / NA	306	I1076M (ATA→ATG)	yhdP	AsmA2 domain‑containing protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (175/131); total (175/131)

Only 100 of 309 total aligned reads displayed.

AGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGATTATTAA  >  NC_000913/3392933‑3393128

aGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCAt                                                                                                 >  1:5555333/1‑101 (MQ=255)

 gTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATg                                                                                                <  1:5555000/101‑1 (MQ=255)

  ttGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATgg                                                                                               <  1:5554870/101‑1 (MQ=255)

   tGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATggg                                                                                              <  2:5555148/101‑1 (MQ=255)

    gAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGc                                                                                             >  2:5555341/1‑101 (MQ=255)

    gAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGc                                                                                             >  2:5555337/1‑101 (MQ=255)

    gAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGc                                                                                             >  1:5555338/1‑101 (MQ=255)

     aGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCGGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGcg                                                                                            >  2:5555344/1‑101 (MQ=255)

     aGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGcg                                                                                            <  2:5554953/101‑1 (MQ=255)

       tATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGcgtc                                                                                          <  2:5554819/101‑1 (MQ=255)

       tATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGcgtc                                                                                          <  1:5554540/101‑1 (MQ=255)

        atgaatgaTGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGcgtcg                                                                                         >  2:5555349/1‑101 (MQ=255)

         tgaatgaTGCCATTCAACGTCGCTTCATCTGGCTGCCCGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGcgtcgt                                                                                        >  1:5555353/1‑101 (MQ=255)

          gaatgaTGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTg                                                                                       >  1:5555358/1‑101 (MQ=255)

          gaatgaTGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTg                                                                                       >  2:5555357/1‑101 (MQ=255)

           aatgaTGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGa                                                                                      >  1:5555364/1‑101 (MQ=255)

           aatgaTGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGa                                                                                      >  2:5555363/1‑101 (MQ=255)

               atgCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGcgt                                                                                           >  2:5555369/1‑92 (MQ=255)

               atgCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACAcc                                                                                  <  1:5554656/101‑1 (MQ=255)

                  ccATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaa                                                                               >  2:5555372/1‑101 (MQ=255)

                  ccATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaa                                                                               <  2:5554749/101‑1 (MQ=255)

                  ccATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaa                                                                               <  2:5555040/101‑1 (MQ=255)

                   cATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaaa                                                                              >  2:5555377/1‑101 (MQ=255)

                   cATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaaa                                                                              <  1:5555022/101‑1 (MQ=255)

                   cATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaaa                                                                              >  1:5555375/1‑101 (MQ=255)

                   cATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaaa                                                                              <  2:5554985/101‑1 (MQ=255)

                   cATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaa                                                                               <  1:5554763/100‑1 (MQ=255)

                    aTTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCaaaaa                                                                             >  1:5555379/1‑101 (MQ=255)

                        aaCGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTc                                                                         >  2:5555383/1‑101 (MQ=255)

                          cGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTg                                                                       <  2:5555035/101‑1 (MQ=255)

                          cGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTg                                                                       >  2:5555387/1‑101 (MQ=255)

                            tCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTgcg                                                                     >  1:5555390/1‑101 (MQ=255)

                               cTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTgcggcg                                                                  >  1:5555393/1‑101 (MQ=255)

                                 tCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCggcggc                                                                >  1:5555398/1‑101 (MQ=255)

                                 tCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCggcggc                                                                >  2:5555399/1‑101 (MQ=255)

                                 tCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCggcggc                                                                <  2:5554849/101‑1 (MQ=255)

                                  cATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCa                                                               <  1:5554810/101‑1 (MQ=255)

                                  cATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCa                                                               <  1:5554933/101‑1 (MQ=255)

                                   aTCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCAt                                                              >  2:5555403/1‑101 (MQ=255)

                                   aTCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCAt                                                              <  2:5554812/101‑1 (MQ=255)

                                   aTCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCAt                                                              <  1:5554940/101‑1 (MQ=255)

                                     cTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCa                                                            <  1:5555009/101‑1 (MQ=255)

                                      tGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCaa                                                           >  1:5555406/1‑101 (MQ=255)

                                        gCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAtt                                                         <  1:5554875/101‑1 (MQ=255)

                                         cTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAttt                                                        >  2:5555409/1‑101 (MQ=255)

                                          tGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAtttt                                                       >  1:5555412/1‑101 (MQ=255)

                                          tGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAtttt                                                       <  2:5554831/101‑1 (MQ=255)

                                            ccAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCt                                                     >  2:5555416/1‑101 (MQ=255)

                                              aGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGc                                                   >  1:5555420/1‑101 (MQ=255)

                                               gggTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGcc                                                  >  2:5555422/1‑101 (MQ=255)

                                                ggTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGccc                                                 <  1:5554964/101‑1 (MQ=255)

                                                 gTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcg                                                >  1:5555425/1‑101 (MQ=255)

                                                  tGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgc                                               <  2:5555238/101‑1 (MQ=255)

                                                  tGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgc                                               <  2:5554925/101‑1 (MQ=255)

                                                   gCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTc                                                      >  2:5555428/1‑93 (MQ=255)

                                                    cTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCgcgc                                             <  1:5554957/101‑1 (MQ=255)

                                                    cTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCgcgc                                             <  2:5555079/101‑1 (MQ=255)

                                                     tttGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCa                                            >  2:5555434/1‑101 (MQ=255)

                                                     tttGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCa                                            >  1:5555435/1‑101 (MQ=255)

                                                         cgcCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGttt                                        >  2:5555438/1‑101 (MQ=255)

                                                         cgcCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGttt                                        <  2:5554903/101‑1 (MQ=255)

                                                          gcCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGtttt                                       <  2:5554775/101‑1 (MQ=255)

                                                             aGTGTAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCt                                    >  2:5555443/1‑101 (MQ=255)

                                                               tgtAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCttt                                  <  2:5555003/101‑1 (MQ=255)

                                                                gtAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTc                                 >  1:5555447/1‑101 (MQ=255)

                                                                 tAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCa                                <  2:5554976/101‑1 (MQ=255)

                                                                 tAAATCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCa                                >  2:5555449/1‑101 (MQ=255)

                                                                  aaaTCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTc                                 >  1:5555451/1‑99 (MQ=255)

                                                                    aTCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCg                             <  2:5555183/101‑1 (MQ=255)

                                                                     tCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGa                            <  2:5554893/101‑1 (MQ=255)

                                                                     tCGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGa                            >  2:5555455/1‑101 (MQ=255)

                                                                      cGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAg                           <  1:5555176/101‑1 (MQ=255)

                                                                      cGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAg                           <  1:5555143/101‑1 (MQ=255)

                                                                      cGTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAg                           >  2:5555458/1‑101 (MQ=255)

                                                                       gTAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAgg                          >  1:5555460/1‑101 (MQ=255)

                                                                        tAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGt                         <  2:5554931/101‑1 (MQ=255)

                                                                        tAATCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGt                         <  1:5554745/101‑1 (MQ=255)

                                                                         aaTCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAgg                          >  2:5555464/1‑99 (MQ=255)

                                                                         aaTCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTa                        <  1:5554894/101‑1 (MQ=255)

                                                                          aTCCACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTAc                       >  1:5555467/1‑101 (MQ=255)

                                                                           tCCACATTAAATGACGACTGGCGCATGGGCGTCGTGacac                                                                                   >  2:5555471/1‑40 (MQ=255)

                                                                            ccACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTATGt                     >  1:5555472/1‑101 (MQ=255)

                                                                            ccACATTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGt                     <  1:5554860/101‑1 (MQ=255)

                                                                              acaTTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTc                   >  1:5555479/1‑101 (MQ=255)

                                                                              acaTTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTc                   >  2:5555477/1‑101 (MQ=255)

                                                                              acaTTAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTc                   <  1:5554922/101‑1 (MQ=255)

                                                                                 ttAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCAtt                >  1:5555483/1‑101 (MQ=255)

                                                                                  tAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTc               >  1:5555488/1‑101 (MQ=255)

                                                                                  tAAATGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTc               >  2:5555487/1‑101 (MQ=255)

                                                                                    aaTGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTccc             >  2:5555492/1‑101 (MQ=255)

                                                                                      tGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCgcgccg                                           >  1:5555497/1‑67 (MQ=255)

                                                                                      tGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTAc                       >  2:5555496/1‑89 (MQ=255)

                                                                                      tGACGACTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCg           <  2:5554709/101‑1 (MQ=255)

                                                                                          gacTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGatt       >  1:5555504/1‑101 (MQ=255)

                                                                                          gacTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGatt       >  2:5555503/1‑101 (MQ=255)

                                                                                           acTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGatta      >  2:5555508/1‑101 (MQ=255)

                                                                                            cTGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGattat     <  1:5555077/101‑1 (MQ=255)

                                                                                             tGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGattatt    <  1:5554982/101‑1 (MQ=255)

                                                                                             tGGCGCATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGattatt    <  2:5554872/101‑1 (MQ=255)

                                                                                               gcgcATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGATTATTaa  >  1:5555513/1‑101 (MQ=255)

AGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCATTCCCCGGATTATTAA  >  NC_000913/3392933‑3393128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`