BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,209,497	T→C	pseudogene (159/537 nt)	stfE ←	e14 prophage; putative side tail fiber protein fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,209,497	0	T	C	100.0%	1521.7 / NA	360	pseudogene (159/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (187/173); total (187/173)

Only 100 of 360 total aligned reads displayed.

ATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTA  >  NC_000913/1209399‑1209594

aTAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTc                                                                                                 <  1:2332879/101‑1 (MQ=255)

aTAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTc                                                                                                 >  2:2329656/1‑101 (MQ=255)

 tAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTcc                                                                                                >  2:2333182/1‑101 (MQ=255)

 tAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTcc                                                                                                <  2:2333114/101‑1 (MQ=255)

  agagCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCg                                                                                               <  2:2333055/101‑1 (MQ=255)

  agagCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCg                                                                                               >  1:2329431/1‑101 (MQ=255)

   gagCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCgg                                                                                              <  1:2332909/101‑1 (MQ=255)

   gagCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCgg                                                                                              >  2:2329719/1‑101 (MQ=255)

    agCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCggg                                                                                             <  2:2332832/101‑1 (MQ=255)

     gCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGt                                                                                            >  2:2333186/1‑101 (MQ=255)

     gCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGAGt                                                                                            <  1:2332620/101‑1 (MQ=255)

      cGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTa                                                                                           >  1:2333187/1‑101 (MQ=255)

      cGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTa                                                                                           <  1:2332852/101‑1 (MQ=255)

          cTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTAttct                                                                                       >  1:2333194/1‑101 (MQ=255)

           tGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTAttctt                                                                                      <  2:2332783/101‑1 (MQ=255)

            gTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTAttcttc                                                                                     <  1:2333080/101‑1 (MQ=255)

             tATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTca                                                                                    >  1:2329663/1‑101 (MQ=255)

               tCAAGCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTcagc                                                                                  <  1:2332736/101‑1 (MQ=255)

                cAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCgg                                                                                              <  2:2332806/88‑1 (MQ=255)

                cAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTcagca                                                                                 >  2:2333200/1‑101 (MQ=255)

                cAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTcagca                                                                                 >  1:2333199/1‑101 (MQ=255)

                 aaTCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTcagcag                                                                                <  2:2332730/101‑1 (MQ=255)

                 aaTCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTcagcag                                                                                <  2:2332751/101‑1 (MQ=255)

                 aaTCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTcagcag                                                                                >  1:2328853/1‑101 (MQ=255)

                   tCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGaa                                                                              <  2:2332862/101‑1 (MQ=255)

                   ccccccGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGaa                                                                              >  1:2333204/2‑101 (MQ=255)

                    cccccGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTcagc                                                                                  <  2:2332987/96‑1 (MQ=255)

                     ccccGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGaaaa                                                                            >  2:2333208/1‑101 (MQ=255)

                      cccgcccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGaaaaa                                                                           <  1:2332786/101‑1 (MQ=255)

                      cccgcccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGaaaaa                                                                           >  1:2329285/1‑101 (MQ=255)

                        cgcccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGc                                                                         <  2:2332847/101‑1 (MQ=255)

                        cgcccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGc                                                                         <  1:2333057/101‑1 (MQ=255)

                           ccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGc                                                                         >  1:2329752/1‑98 (MQ=255)

                           ccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGc                                                                      <  1:2332768/101‑1 (MQ=255)

                           ccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGc                                                                      >  1:2329546/1‑101 (MQ=255)

                           ccgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGc                                                                      <  2:2332698/101‑1 (MQ=255)

                            cgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCa                                                                     <  2:2332875/101‑1 (MQ=255)

                              tCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCAcc                                                                   >  2:2329364/1‑101 (MQ=255)

                               cATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCa                                                                  <  2:2332573/101‑1 (MQ=255)

                                aTCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAt                                                                 <  2:2332968/101‑1 (MQ=255)

                                aTCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAt                                                                 >  2:2333214/1‑101 (MQ=255)

                                aTCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAt                                                                 <  2:2332629/101‑1 (MQ=255)

                                 tCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAtt                                                                >  2:2329509/1‑101 (MQ=255)

                                  cccAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGaa                                                                              <  1:2332798/86‑1 (MQ=255)

                                  cccAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAtt                                                                <  2:2332704/100‑1 (MQ=255)

                                    cAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCa                                                             <  1:2333106/101‑1 (MQ=255)

                                     aGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAt                                                            >  1:2333216/1‑101 (MQ=255)

                                       ccACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAttt                                                          >  1:2329617/1‑101 (MQ=255)

                                       ccACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAttt                                                          >  1:2329196/1‑101 (MQ=255)

                                         aCGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGaaaa                                                                            <  1:2332990/81‑1 (MQ=255)

                                         aCGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTca                                                        >  1:2329378/1‑101 (MQ=255)

                                         aCGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTca                                                        >  1:2329342/1‑101 (MQ=255)

                                         aCGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTca                                                        <  2:2332467/101‑1 (MQ=255)

                                          cGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTcag                                                       >  1:2333219/1‑101 (MQ=255)

                                               aaaCTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTcagccagc                                                  >  1:2333223/1‑101 (MQ=255)

                                                aaCTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCagccagcc                                                 >  1:2329458/1‑101 (MQ=255)

                                                aaCTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCagccagcc                                                 <  1:2332805/101‑1 (MQ=255)

                                                  cTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTg                                               <  1:2333024/101‑1 (MQ=255)

                                                  cTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTg                                               >  2:2329612/1‑101 (MQ=255)

                                                  cTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTg                                               <  1:2332572/101‑1 (MQ=255)

                                                      ccacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTgg                                           >  2:2333226/1‑101 (MQ=255)

                                                        acGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCg                                         <  2:2333017/101‑1 (MQ=255)

                                                         cGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCgg                                        >  2:2333229/1‑101 (MQ=255)

                                                          gTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGa                                       <  1:2332947/101‑1 (MQ=255)

                                                          gTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGa                                       <  1:2332715/101‑1 (MQ=255)

                                                           tAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGtt                                             >  1:2329493/1‑94 (MQ=255)

                                                           tAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAg                                      >  2:2329760/1‑101 (MQ=255)

                                                           tAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAg                                      >  2:2329434/1‑101 (MQ=255)

                                                           tAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAg                                      >  2:2329258/1‑101 (MQ=255)

                                                            aaaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGt                                     >  2:2329186/1‑101 (MQ=255)

                                                             aaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTg                                    <  1:2332689/101‑1 (MQ=255)

                                                               tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGc                                  <  2:2332894/101‑1 (MQ=255)

                                                                cAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCt                                 >  1:2329423/1‑101 (MQ=255)

                                                                 aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTg                                >  2:2329289/1‑101 (MQ=255)

                                                                 aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTg                                >  2:2329212/1‑101 (MQ=255)

                                                                    cAATTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAg                             >  1:2329484/1‑101 (MQ=255)

                                                                     aaTTTATTTGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAgg                            >  1:2333235/1‑101 (MQ=255)

                                                                        ttatttGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCa                         >  1:2333238/1‑101 (MQ=255)

                                                                           tttGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGa                               >  1:2329245/1‑92 (MQ=255)

                                                                           tttGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACgg                      >  1:2329466/1‑101 (MQ=255)

                                                                           tttGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACgg                      <  2:2333090/101‑1 (MQ=255)

                                                                            ttGTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGa                     <  1:2332752/101‑1 (MQ=255)

                                                                              gTCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAc                   <  1:2332917/101‑1 (MQ=255)

                                                                               tCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTcagcc                                                     <  1:2332871/66‑1 (MQ=255)

                                                                               tCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAcc                  >  2:2329449/1‑101 (MQ=255)

                                                                               tCGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAcc                  <  2:2332712/101‑1 (MQ=255)

                                                                                cGGATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCg                 <  2:2332920/101‑1 (MQ=255)

                                                                                 ggATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCgg                <  1:2333169/101‑1 (MQ=255)

                                                                                  gATAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCggg               <  2:2332953/101‑1 (MQ=255)

                                                                                   aTAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGa              >  1:2329591/1‑101 (MQ=255)

                                                                                   aTAAGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGa              >  2:2329532/1‑101 (MQ=255)

                                                                                     aaGCCTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGaca            <  1:2332817/101‑1 (MQ=255)

                                                                                        ccTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCa         >  2:2333242/1‑101 (MQ=255)

                                                                                        ccTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCa         >  2:2329592/1‑101 (MQ=255)

                                                                                         cTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCaa        >  1:2333243/1‑101 (MQ=255)

                                                                                         cTTTGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCaa        <  1:2332962/101‑1 (MQ=255)

                                                                                            tGCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAg     >  2:2329115/1‑101 (MQ=255)

                                                                                             gCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCCACAgg    >  1:2329093/1‑101 (MQ=255)

                                                                                             gCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAgg    >  1:2333248/1‑101 (MQ=255)

                                                                                             gCCAGCTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAgg    <  1:2332930/101‑1 (MQ=255)

ATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTA  >  NC_000913/1209399‑1209594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`