BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,168,194	(T)_7→6	intergenic (+56/+6)	ycfJ → / ← comR	PF05433 family protein YcfJ/DNA‑binding transcriptional repressor ComR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,168,188	0	T	.	100.0%	1410.8 / NA	269	intergenic (+50/+12)	ycfJ/comR	PF05433 family protein YcfJ/DNA‑binding transcriptional repressor ComR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (164/105); total (164/105)

Only 100 of 308 total aligned reads displayed.

CAGATCCCGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTG  >  NC_000913/1168088‑1168284

cAGATCCCGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCt                                                                                                  >  2:1964652/1‑101 (MQ=255)

 aGATCCCGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCtt                                                                                                 >  1:1964654/1‑101 (MQ=255)

   aTCCCGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCtttt                                                                                               >  2:1964659/1‑101 (MQ=255)

   aTCCCGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCtttt                                                                                               >  1:1964660/1‑101 (MQ=255)

    tCCCGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttttt                                                                                              >  2:1964663/1‑101 (MQ=255)

      ccGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttttttg                                                                                            <  1:1964342/101‑2 (MQ=255)

       cGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttttttgc                                                                                           >  1:1964668/1‑99 (MQ=255)

       cGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttttttgc                                                                                           <  2:1964287/101‑3 (MQ=255)

       cGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttttttgc                                                                                           <  1:1964386/101‑3 (MQ=255)

        gCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttttttgcg                                                                                          >  2:1964669/1‑98 (MQ=255)

          tAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGAc                                                                                       >  1:1964677/1‑101 (MQ=255)

           aGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACt                                                                                      <  1:1964273/101‑1 (MQ=255)

            gATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACtt                                                                                     <  1:1964258/101‑1 (MQ=255)

            gATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACtt                                                                                     >  2:1964680/1‑101 (MQ=255)

             aTAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTa                                                                                    >  1:1964682/1‑101 (MQ=255)

             aTAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTa                                                                                    <  1:1964228/101‑1 (MQ=255)

               aGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTAtt                                                                                  <  2:1964243/101‑1 (MQ=255)

                gCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTAttt                                                                                 >  1:1964686/1‑101 (MQ=255)

                 cAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTc                                                                                >  2:1964690/1‑101 (MQ=255)

                  aaCGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCa                                                                               <  2:1964367/101‑1 (MQ=255)

                  aaCGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCa                                                                               <  1:1964147/101‑1 (MQ=255)

                  aaCGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTAGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCa                                                                               <  1:1964444/101‑1 (MQ=255)

                   aCGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCAc                                                                              <  2:1964141/101‑1 (MQ=255)

                   aCGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCAc                                                                              >  1:1964692/1‑101 (MQ=255)

                    cGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCAcc                                                                             >  2:1964696/1‑101 (MQ=255)

                     gggCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGTCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCa                                                                            >  1:1964698/1‑101 (MQ=255)

                     gggCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCa                                                                            <  1:1964168/101‑1 (MQ=255)

                     gggCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCa                                                                            <  2:1964226/101‑1 (MQ=255)

                     gggCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCa                                                                            <  1:1964535/101‑1 (MQ=255)

                     gggCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCa                                                                            <  2:1964189/101‑1 (MQ=255)

                      ggCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAg                                                                           <  2:1964259/101‑1 (MQ=255)

                       gCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGt                                                                          >  1:1964701/1‑101 (MQ=255)

                        cAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGtt                                                                         >  2:1964705/1‑101 (MQ=255)

                        cAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGtt                                                                         <  1:1964139/101‑1 (MQ=255)

                         aaCTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTc                                                                        <  2:1964056/101‑1 (MQ=255)

                         aaCTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTc                                                                        >  1:1964706/1‑101 (MQ=255)

                           cTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCgg                                                                      >  2:1964712/1‑101 (MQ=255)

                           cTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCgg                                                                      >  1:1964713/1‑101 (MQ=255)

                              aTTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGcc                                                                   <  1:1964209/101‑1 (MQ=255)

                              aTTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGcc                                                                   >  2:1964716/1‑101 (MQ=255)

                               ttttGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCa                                                                  >  2:1964719/1‑101 (MQ=255)

                                tttGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCAt                                                                 <  2:1964099/101‑1 (MQ=255)

                                tttGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCAt                                                                 >  2:1964722/1‑101 (MQ=255)

                                   gAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATaaa                                                              <  2:1964274/101‑1 (MQ=255)

                                   gAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATaaa                                                              >  1:1964725/1‑101 (MQ=255)

                                    aaTAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAAc                                                             <  1:1964032/101‑1 (MQ=255)

                                     aTAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACg                                                            >  1:1964728/1‑101 (MQ=255)

                                      tAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGc                                                           >  1:1964731/1‑101 (MQ=255)

                                      tAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGc                                                           <  2:1964213/101‑1 (MQ=255)

                                      tAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGc                                                           <  1:1964305/101‑1 (MQ=255)

                                       aaCAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCa                                                          >  2:1964736/1‑101 (MQ=255)

                                        aCAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCaa                                                         >  1:1964742/1‑101 (MQ=255)

                                        aCAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCaa                                                         >  1:1964738/1‑101 (MQ=255)

                                         cAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCaaa                                                        >  2:1964746/1‑101 (MQ=255)

                                          aaaGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAg                                                       >  1:1964747/1‑101 (MQ=255)

                                            aGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGc                                                                    >  1:1964753/1‑86 (MQ=255)

                                            aGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTc                                                     >  2:1964752/1‑101 (MQ=255)

                                              tataACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGt                                                   >  2:1964756/1‑101 (MQ=255)

                                              tataACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGt                                                   <  1:1964186/101‑1 (MQ=255)

                                              tataACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGt                                                   >  2:1964759/1‑101 (MQ=255)

                                                taACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTc                                                 <  1:1964111/101‑1 (MQ=255)

                                                  aCAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCg                                               >  1:1964765/1‑101 (MQ=255)

                                                  aCAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCg                                               >  1:1964768/1‑101 (MQ=255)

                                                   cAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGTGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTcc                                                >  1:1964772/1‑99 (MQ=255)

                                                   cAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCgg                                              >  2:1964771/1‑101 (MQ=255)

                                                     aGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCa                                            >  1:1964778/1‑101 (MQ=255)

                                                     aGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCa                                            >  2:1964777/1‑101 (MQ=255)

                                                        cTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATc                                         >  1:1964782/1‑101 (MQ=255)

                                                          gTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTg                                       <  2:1964295/101‑1 (MQ=255)

                                                          gTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTg                                       >  2:1964786/1‑101 (MQ=255)

                                                             ctctGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTg                                       <  2:1964151/98‑1 (MQ=255)

                                                              tctGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATc                                   >  2:1964789/1‑101 (MQ=255)

                                                                tGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAg                                 >  1:1964791/1‑101 (MQ=255)

                                                                 gCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGt                                >  1:1964795/1‑101 (MQ=255)

                                                                 gCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGt                                <  1:1964154/101‑1 (MQ=255)

                                                                  cAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGtt                               >  2:1964797/1‑101 (MQ=255)

                                                                   aaTTTGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGttt                              >  1:1964800/1‑101 (MQ=255)

                                                                     tttGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGttttt                            >  2:1964802/1‑101 (MQ=255)

                                                                       tGGCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTcc                          <  2:1964404/101‑1 (MQ=255)

                                                                        ggCCCCTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCa                         <  1:1964090/101‑1 (MQ=255)

                                                                           cccTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCg                      >  2:1964806/1‑101 (MQ=255)

                                                                             cTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGAt                    >  2:1964811/1‑101 (MQ=255)

                                                                             cTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGAt                    >  1:1964812/1‑101 (MQ=255)

                                                                             cTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGAt                    <  1:1964242/101‑1 (MQ=255)

                                                                             cTCATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGAt                    <  1:1964164/101‑1 (MQ=255)

                                                                               cATTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGc                  >  1:1964816/1‑101 (MQ=255)

                                                                                aTTCGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCa                 >  2:1964819/1‑101 (MQ=255)

                                                                                   cGCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCt              <  1:1964363/101‑1 (MQ=255)

                                                                                    gCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCaaa                                                        >  2:1964824/1‑58 (MQ=255)

                                                                                    gCTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCtt             >  1:1964823/1‑101 (MQ=255)

                                                                                     cTCAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTc            <  2:1964475/101‑1 (MQ=255)

                                                                                       cAGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTcgc          <  1:1964220/101‑1 (MQ=255)

                                                                                        aGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTcgcg         >  1:1964828/1‑101 (MQ=255)

                                                                                        aGGCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTc            <  1:1964418/98‑1 (MQ=255)

                                                                                         ggCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCt              >  2:1964831/1‑95 (MQ=255)

                                                                                         ggCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGt        <  1:1964290/101‑1 (MQ=255)

                                                                                          gCTGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTg       <  1:1964325/101‑1 (MQ=255)

                                                                                            tGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTgcg     >  2:1964836/1‑101 (MQ=255)

                                                                                            tGAGGGGC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTgcg     >  1:1964835/1‑101 (MQ=255)

                                                                                               ggggC‑TTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTg  >  1:1964842/1‑101 (MQ=255)

CAGATCCCGCTAGATAGCAACGGGCAACTGATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTG  >  NC_000913/1168088‑1168284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`