| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,012 | 1 | . | G | 95.0% | 488.3 / 17.0 | 121 | intergenic (‑131/+57) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Reads supporting (aligned to +/- strand): ref base . (6/0); new base G (114/1); total (120/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 185 total aligned reads displayed.
TATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTG > NC_000913/379912‑380101 | tataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa < 1:649396/101‑1 (MQ=255)tataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 1:649994/1‑101 (MQ=255) ataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑g < 1:649172/101‑1 (MQ=255) ataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑g < 2:649581/101‑1 (MQ=255) ataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑g > 2:649998/1‑101 (MQ=255) ataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑g > 1:649997/1‑101 (MQ=255) taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gg > 2:650001/1‑101 (MQ=255) taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gg > 2:650002/1‑101 (MQ=255) taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gg > 2:650004/1‑101 (MQ=255) taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gg > 1:650005/1‑101 (MQ=255) aGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggg < 2:649470/101‑1 (MQ=255) aGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggg > 2:650007/1‑101 (MQ=255) ggggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggg < 2:649421/101‑1 (MQ=255) ggggGATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggggg > 1:650010/1‑101 (MQ=255) gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggggggg < 1:649759/101‑1 (MQ=255) gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggggggg > 1:650011/1‑101 (MQ=255) gTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggggggggg > 1:650015/1‑101 (MQ=255) gTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggggggggg > 2:650014/1‑101 (MQ=255) tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggggggggg > 2:650018/1‑101 (MQ=255) ttCTATATGTCAATGCATACCCCCCTACAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggggggggggc > 2:650020/1‑99 (MQ=255) tCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 1:650022/1‑88 (MQ=255) tCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggggggggggct > 2:650021/1‑98 (MQ=255) tataTGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 1:650024/1‑86 (MQ=255) tatGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATc > 1:650026/1‑101 (MQ=255) tatGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggggggggggcta > 1:650028/1‑94 (MQ=255) tGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCgg > 2:650030/1‑101 (MQ=255) gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 2:650034/1‑81 (MQ=255) gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGc > 1:650033/1‑101 (MQ=255) tCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCa > 1:650035/1‑101 (MQ=255) cAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 1:650037/1‑79 (MQ=255) aaTGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 2:650042/1‑78 (MQ=255) aaTGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCg > 1:650041/1‑96 (MQ=255) tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGa > 1:650045/1‑101 (MQ=255) gCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGGGCTAATCGGCAGGGAAg > 1:650047/1‑101 (MQ=255) cATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAg > 2:650048/1‑101 (MQ=255) aTACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650050/1‑101 (MQ=255) ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650053/1‑97 (MQ=255) cccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGGATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650055/1‑97 (MQ=255) cccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650054/1‑97 (MQ=255) cccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAgg > 2:650058/1‑90 (MQ=255) cccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650057/1‑95 (MQ=255) ccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 1:650061/1‑66 (MQ=255) cTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGa > 2:650062/1‑90 (MQ=255) tataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650064/1‑92 (MQ=255) ataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 2:650070/1‑63 (MQ=255) ataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650068/1‑91 (MQ=255) ataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 1:650067/1‑98 (MQ=255) taGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGaa > 1:650072/1‑88 (MQ=255) gTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650076/1‑88 (MQ=255) gTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 1:650075/1‑95 (MQ=255) gTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggg > 2:650077/1‑64 (MQ=255) tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 1:650080/1‑57 (MQ=255) ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650082/1‑84 (MQ=255) taACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650084/1‑83 (MQ=255) aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gggggg > 1:650087/1‑60 (MQ=255) acacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 2:650088/1‑88 (MQ=255) cacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggggg > 2:650091/1‑57 (MQ=255) cacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑ggggg > 1:650090/1‑57 (MQ=255) acTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGa > 2:650093/1‑76 (MQ=255) cTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgcc > 2:650097/1‑80 (MQ=255) cTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgcc > 1:650098/1‑80 (MQ=255) tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 1:650102/1‑49 (MQ=255) tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAg > 1:650101/1‑71 (MQ=255) ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAg > 1:650104/1‑75 (MQ=255) gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCcccccc > 2:650106/1‑82 (MQ=255) agaATAAAATTTCTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑gg < 2:649540/48‑1 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgc > 1:650108/1‑73 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgcc > 2:650112/1‑73 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 1:650111/1‑78 (MQ=255) aaaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAggg > 2:650115/1‑65 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650117/1‑68 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650118/1‑68 (MQ=255) aaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgcc > 2:650121/1‑69 (MQ=255) aTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 2:650124/1‑73 (MQ=255) aTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGaa > 1:650123/1‑101 (MQ=255) tttATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGGCTAATCGGCAgg > 2:650127/1‑61 (MQ=255) ttATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650129/1‑64 (MQ=255) ttATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650128/1‑64 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAggg > 1:650132/1‑58 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650136/1‑61 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAggg > 1:650139/1‑56 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGaa > 2:650138/1‑58 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCa > 1:650134/1‑101 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 1:650141/1‑66 (MQ=255) tGAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAggg > 1:650144/1‑52 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 1:650147/1‑55 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgccc > 2:650146/1‑57 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650150/1‑54 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgc > 1:650149/1‑55 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGGGCTAATCGGCAGGGa > 1:650153/1‑46 (MQ=255) gTCGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgcc > 1:650156/1‑50 (MQ=255) cGGAAAACAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650158/1‑46 (MQ=255) aaaaCAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCcccccc > 1:650160/1‑50 (MQ=255) aaaCAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAggg > 2:650161/1‑38 (MQ=255) aCAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgcc > 2:650163/1‑42 (MQ=255) cAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAgg > 2:650167/1‑39 (MQ=255) cAAAGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGgcc > 1:650166/1‑41 (MQ=255) aaaGAGGAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGGcccccc > 2:650170/1‑45 (MQ=255) ggAAAG‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGa < 2:649666/61‑1 (MQ=255) gAAA‑‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 1:650172/1‑38 (MQ=255) | TATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTG > NC_000913/379912‑380101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |